Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d22r
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_22905| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4) 30 1.6
SB_4859| Best HMM Match : Nucleoplasmin (HMM E-Value=5.1) 30 2.2
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_30219| Best HMM Match : DUF501 (HMM E-Value=8.4) 29 2.8
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13) 29 5.0
SB_13011| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16) 28 6.6
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 41.5 bits (93), Expect = 7e-04
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Frame = -1
Query: 512 RTKKLNRRLEALTVKKYGSVDSGLNRVGI-AAPGTNKHAVEGSNPIW-----NETIKAPD 351
+TK+ R+L A T YG+ + + + + P TN H EGSNPIW N + D
Sbjct: 15 QTKRQKRKLRAATAASYGASTTQFSIGTVNSMPTTNLHVAEGSNPIWVDPYHNWGLNTDD 74
Query: 350 FDSMSDASNDSDLIGIEDLPHFGENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSP 171
D + +++ + P F E+ +D+ ++ D + + P SP
Sbjct: 75 EDKATPLYDNAVMDRAHGNPLF-ESQEISYDYVDLDNDSHDYETMNGKQRRPSNNRPASP 133
Query: 170 E 168
E
Sbjct: 134 E 134
>SB_22905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 31.9 bits (69), Expect = 0.53
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +2
Query: 17 LSNKSITL*VGISLF----CKVSRYTFVESVKKKL*YKLNFSFIIKFISGIDLQIPD*RV 184
L N +++ V ISLF CK++ F E++ L Y + F+F +K +++ V
Sbjct: 186 LDNPGLSVFVDISLFRFIVCKMADDHFEEALVVGLSY-IGFNFNLKSKQKQAVRV----V 240
Query: 185 LI*SRNCCCVLPLCLRAYQFSFHR 256
+ C CVLP C + Y F R
Sbjct: 241 AVDQEACFCVLPTCRQKYNFRLLR 264
>SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4)
Length = 494
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 281 ENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEFANQ 156
+ Y + + +++TDKP D+ + FG KS P FA Q
Sbjct: 423 DRKYHRYPWRDLETDKPPDVYEMNCLMFGDKSLPCEANFAVQ 464
>SB_4859| Best HMM Match : Nucleoplasmin (HMM E-Value=5.1)
Length = 187
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -1
Query: 407 KHAVEGSNPIWNETIKAPDFDSMSDASNDSDLIGIEDLPHFGENNYFPHDFDEMKTDKPE 228
+H EG + +W++ APD D D +D D +D + G+++ D D+ D +
Sbjct: 118 EHIAEGDDLVWSD--GAPDDDDDDDDDDDDDDDDDDDDDNDGDDDDDDDDDDDDDDDDDD 175
Query: 227 DIV 219
D V
Sbjct: 176 DEV 178
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = -1
Query: 347 DSMSDASNDSDLIGIEDLPHFGENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPE 168
++ S +N + + + + P +P++ E+K + P D+VA +++ G+ S F E
Sbjct: 456 ENPSSKTNPYENVELSNGPSESPKPVYPYENVELKHEDPYDVVANSDDSDGWDSDEFDDE 515
>SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 281 ENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEFANQ 156
+ Y + + +++TDKP D+ + FG KS+P FA Q
Sbjct: 307 DRKYHRYLWRDLETDKPPDVYEMNCLVFGDKSSPCEANFAVQ 348
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 281 ENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEFANQ 156
+ Y + + +++TDKP D+ + FG KS+P FA Q
Sbjct: 900 DRKYHRYLWRDLETDKPPDVYEINCLVFGDKSSPCEANFAVQ 941
>SB_30219| Best HMM Match : DUF501 (HMM E-Value=8.4)
Length = 226
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 281 ENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEFANQ 156
+ Y + + +++TDKP D+ + FG KS+P FA Q
Sbjct: 184 DRKYHRYLWRDLETDKPPDVYEMNCLVFGDKSSPCEANFAVQ 225
>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 281 ENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEFANQ 156
+ Y + + +++TDKP D+ + FG KS+P FA Q
Sbjct: 442 DRKYHRYLWRDLETDKPPDVYEMNCLVFGDKSSPCETNFAVQ 483
>SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)
Length = 1012
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 281 ENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEFANQ 156
+ Y + + +++TDKP D+ + FG KS+P FA Q
Sbjct: 498 DRKYHRYLWRDLETDKPPDVDEMNCLVFGDKSSPCEANFAVQ 539
>SB_13011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 281 ENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEFANQ 156
+ Y + + +++TDKP D+ + FG KS+P FA Q
Sbjct: 63 DRKYHRYLWRDLETDKPPDVDEMNCLVFGDKSSPCEANFAVQ 104
>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 281 ENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEFANQ 156
+ Y + + +++TDKP D+ + FG KS+P FA Q
Sbjct: 688 DRKYHRYLWRDLETDKPPDVNEMNCLVFGDKSSPCEANFAVQ 729
>SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)
Length = 894
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 228 RHSGNTQQQFRLQINTLQSGICKSIPEI 145
R +G QQ+F +Q+ Q ICK P++
Sbjct: 39 RLTGPGQQKFNVQVTLTQEEICKKFPKL 66
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 419 PGTNKHAVEGSNPIWNETIKAPDFDSMSDASNDSDLIGIEDLPH 288
P + VEG +W I P M++ASN L G+ H
Sbjct: 1444 PTVKRDPVEGVALLWQPEIVKPYLSIMAEASNPETLEGVAGALH 1487
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,556,834
Number of Sequences: 59808
Number of extensions: 370156
Number of successful extensions: 1100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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