Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d22r
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF...    31   0.76 
At5g07720.1 68418.m00885 galactosyl transferase GMA12/MNN10 fami...    29   2.3  
At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 fami...    29   3.1  
At3g08620.1 68416.m01001 KH domain-containing protein                  28   5.4  
At5g12240.1 68418.m01437 expressed protein                             28   7.1  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   7.1  
At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 fami...    28   7.1  

>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
           EF-1-beta, putative nearly identical to eEF-1beta
           [Arabidopsis thaliana] GI:398606
          Length = 231

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -1

Query: 464 YGSVDSGLNRVGIAAPGTNKHAVEGSNPIWNETIKAPD-FDSMSDASNDSDLIGIEDLPH 288
           +  +D+ L   G++A G+    VEGS+PI  E +  P   DS   A+ + D    +D+  
Sbjct: 57  FNHIDALLRISGVSAEGSGV-IVEGSSPITEEAVATPPAADSKDTAAEEED---DDDVDL 112

Query: 287 FGE 279
           FGE
Sbjct: 113 FGE 115


>At5g07720.1 68418.m00885 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 457

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 287 FGENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEF 165
           F EN Y+ H F E   DK E+++  ++   G +  PF   F
Sbjct: 338 FVENQYYLHGFWEGLVDKYEEMMEKYHPGLGDERWPFITHF 378


>At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 457

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 287 FGENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEF 165
           F EN Y+ H F E   D+ E+++  ++   G +  PF   F
Sbjct: 339 FVENQYYLHGFWEGLVDRYEEMIEKYHPGLGDERWPFVTHF 379


>At3g08620.1 68416.m01001 KH domain-containing protein 
          Length = 283

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 357 GFNGLVPDRIGAFHGM 404
           G+NGL P+RIG  HGM
Sbjct: 102 GWNGLPPERIGGPHGM 117


>At5g12240.1 68418.m01437 expressed protein 
          Length = 225

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 203 CCCVLPLCLRAYQFSFHRSHEGNNYFRRSVADLQCRLDQSR 325
           CCC   L  R   FSF      ++ F R+       LD S+
Sbjct: 46  CCCYCQLICRELDFSFKTLIYSSSSFERAFTSKLAELDSSK 86


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -1

Query: 350  FDSMSDASNDSDLIGIEDLPHFGENNYFPHDFDEMKTDKPEDIVATHNNNFGF 192
            F    +   D D   ++D+ H  ++     D  ++  +  + I +THN  FGF
Sbjct: 3517 FSEWQEYLADDDTKNVKDMTHIDQDEENLEDDWDLIQEHLDSIYSTHNELFGF 3569


>At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 632

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 281 ENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEF 165
           EN Y+ H F E   D+ E+++  ++   G +  PF   F
Sbjct: 518 ENQYYLHGFWEGLVDRYEEMIEKYHPGLGDERWPFVTHF 556


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,642,213
Number of Sequences: 28952
Number of extensions: 265330
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)