Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d22f
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    29   0.69 
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    28   1.2  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   6.4  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   8.5  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    25   8.5  

>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 29  YSDRANVKIYLISTRNRVFFLFVNTLEQVEQNTDFIAQTFS---AGFEMTCNIDQVVPAT 199
           Y +++ +K   +ST N V  +F++  +Q+EQ   F    +S     FE T  + +     
Sbjct: 80  YKNQSLMKKTSVSTSNTVKMVFMSLAKQIEQMLKFCMMVYSKLCEAFETTLKVAKEFQIC 139

Query: 200 DAS 208
           D+S
Sbjct: 140 DSS 142


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +2

Query: 59  LISTRNRVFFLFVNTLEQVEQNTDFIAQTFSAGFEMTCNIDQVVPATD--ASGVIMNGIT 232
           ++++ ++ FF+F N  E    N+D + Q F  G E+       VP  +   + ++  GI 
Sbjct: 332 MLASLSKAFFIFDNQNEIFNFNSDSLQQQFRQGEEIVKQSFFQVPDYNILVATLLREGIE 391

Query: 233 EVRGHF-IRDNVPV 271
            ++ +  IR  +PV
Sbjct: 392 NLKDNMSIRPGIPV 405


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = +2

Query: 92  FVNT-LEQVEQNTDFIAQTFSAGFEMTCNIDQVVPATDASGVIMNGITEVR----GHFIR 256
           F+N+ + ++E N D I + FS  F  + N+  +    +   V++    E+     G  + 
Sbjct: 180 FINSNILRIEAN-DLIEKIFSILFSDSLNVLYITSVLNILPVLVKRRKELAPKIIGSLLE 238

Query: 257 DNVPVPADEIETLRGDMVLLTAIQSTLATRLLVL 358
            ++P P DEIE      + +  I+  L   LL L
Sbjct: 239 FHLPNPKDEIELSNESKLAIRCIEKNLKLILLHL 272


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +2

Query: 128 DFIAQTFSA---GFEMTCNIDQVVPATDASGVIMNGI 229
           +FIA T +    GF   C+++ ++PA ++S  +  G+
Sbjct: 617 EFIAVTDAQCLEGFRALCHLEGIIPALESSHAVYGGM 653


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 596 HVYWCPAPRC 567
           H+ WCPAP C
Sbjct: 213 HLRWCPAPDC 222


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 182 QVVPATDASGVIMNGITEVRGHF 250
           + +  T+ +G++  G+T+V GHF
Sbjct: 306 EAITRTNRAGLLPVGVTKVHGHF 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,572
Number of Sequences: 5004
Number of extensions: 34064
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)