Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d22f
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0458 + 14280953-14281866,14281964-14282912                       31   0.93 
03_01_0427 + 3296717-3296861,3296966-3297210                           29   2.8  
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719...    28   6.6  
05_04_0270 - 19598062-19598694,19598797-19599154,19599247-195994...    28   6.6  

>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +3

Query: 144 PFPPASR*RVTSTKSFRPLTPAGSS*TASPK*GDTSSAIMCPYQPTRSRLSEGTWCC 314
           P PP+S    T T S  P  P   + T+SP    +S   + P QPT   L   T  C
Sbjct: 31  PSPPSSN--STPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPLQPTPPPLPPTTLSC 85


>03_01_0427 + 3296717-3296861,3296966-3297210
          Length = 129

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 305 MVLLTAIQSTLATRLLVLRDLFTDTSP--APDAGS 403
           +VLL  + ST+ATR  V  D F+  SP  AP  GS
Sbjct: 16  VVLLLIVASTVATRAAVADDFFSPLSPLLAPVIGS 50


>12_01_0788 +
           7192937-7192994,7193074-7193160,7193242-7193307,
           7193447-7193555,7194522-7194785,7194919-7195006,
           7195085-7195708,7196017-7196140,7196195-7196337,
           7196434-7196649,7196781-7196873,7196952-7197032,
           7197120-7197504,7197599-7197636
          Length = 791

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 234 K*GDTSSAIMCPYQPTRSRLSEGTWCC 314
           K G   SA   PY+P R R  + TW C
Sbjct: 558 KSGGGDSARNSPYEPLRDRPGDWTWLC 584


>05_04_0270 -
           19598062-19598694,19598797-19599154,19599247-19599491,
           19599869-19599877,19599909-19599977,19600043-19600552
          Length = 607

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 212 PRWRQWPERLGRCYTSSRSRRKRFVL 135
           P +R+WPER GR +      R R V+
Sbjct: 83  PHYREWPERYGRPFVFWLGPRPRLVV 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,844,334
Number of Sequences: 37544
Number of extensions: 272366
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)