Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d22f
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26280.1 68415.m03154 smr (Small MutS Related) domain-contain...    28   5.4  
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule...    27   9.5  

>At2g26280.1 68415.m03154 smr (Small MutS Related) domain-containing
           protein weak similarity to PRLI-interacting factor N
           [Arabidopsis thaliana] GI:11139276; contains Pfam
           profile PF01713: Smr domain
          Length = 567

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 325 DGSQQHHVPSESLDLVGWYGHIIADEVSPHFGDAVHDDPAGVSGRNDLVDVT 170
           + S  HH   E+     ++ H + D+++P FG    DD +  SG   L +++
Sbjct: 65  ESSASHHSDEEARQ---FWSHQLPDDITPDFGLMTQDDNSYGSGSLSLANLS 113


>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
           ovule-specific homeobox protein A20 nearly identical to
           meristem L1 layer homeobox protein A20 (AtML1)
           [Arabidopsis thaliana] GI:1881536, protodermal factor2
           (PDF2) [Arabidopsis thaliana] GI:14276060
          Length = 762

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 319 SQQHHVPSESLDL-VGWYGH 263
           S  HH+PS SLDL VG +G+
Sbjct: 208 SSSHHIPSRSLDLEVGNFGN 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,181,617
Number of Sequences: 28952
Number of extensions: 194689
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)