Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d21r
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0535 - 23001864-23005052                                         32   0.42 
12_02_0489 - 19619623-19619748,19619850-19620165,19620487-196207...    28   9.1  

>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 145  ENENTKQLLRYSHNKIYYLHIIM*CSSGAPVRHDSAVTIC 264
            E EN ++LLRY   K+    ++   SSG P+R    + +C
Sbjct: 983  EEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRVC 1022


>12_02_0489 -
           19619623-19619748,19619850-19620165,19620487-19620747,
           19621320-19621710,19622242-19622254
          Length = 368

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 556 VIKG-PFYLVSPSTVRCF*LNFN*VYFIQITEKDFF 452
           ++KG P +L  PS +RC+   F     IQI+EK  F
Sbjct: 228 IVKGHPLFLDPPSKLRCYVNLFEWSELIQISEKTAF 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,429,257
Number of Sequences: 37544
Number of extensions: 314893
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)