Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d21r
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical ...    30   1.5  

>AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical
           protein F54A5.2 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 103 LTGCNTKLISAALYENENTKQLLRYSHNKIYYLHIIM*CSSGAPVRHDSAVTICF 267
           LTGC+TK       ENE    +     N       ++ C   APV  +S VT+ F
Sbjct: 77  LTGCSTKENGEGNLENEIEVVMANNEFNAETDKRFLLTCIPAAPVPKESQVTVSF 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,105
Number of Sequences: 27780
Number of extensions: 322152
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)