Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d21r
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase fa...    28   7.6  
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,...    27   10.0 
At4g02750.1 68417.m00375 pentatricopeptide (PPR) repeat-containi...    27   10.0 

>At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase
           family protein similar to phosphatidylinositol 4-kinase
           type-II beta [Homo sapiens] GI:20159767; contains Pfam
           profile PF00454: Phosphatidylinositol 3- and 4-kinase
          Length = 630

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 287 ILKHYDIRNMKTNTPLYLCRNNMSRGERLFVLSDIIATLQE 409
           +LK+ D+  +++++PL L RNN  R      LS + A LQ+
Sbjct: 89  VLKN-DLTAVRSDSPLLLTRNNFHRSSSTPCLSPMRADLQQ 128


>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
           putative similar to mitochondrial elongation factor Tu
           [Arabidopsis thaliana] gi|1149571|emb|CAA61511
          Length = 454

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 680 LQNTSVNLQIT*KFIKNGKGNPSVKLLYRGVKRSGL 573
           L++T   +++  K + NG+   +V LL RG+KR  +
Sbjct: 312 LKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDI 347


>At4g02750.1 68417.m00375 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 781

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 145 ENENTKQLLRYSHNKIYYLHIIM*CSSGAPVRHDSAVTIC 264
           E E  ++++RY   ++   + IM  SSG P+R    + +C
Sbjct: 702 EEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVC 741


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,191
Number of Sequences: 28952
Number of extensions: 278796
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)