Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d21f
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    31   0.14 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    31   0.18 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    30   0.32 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    29   0.74 
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    28   1.3  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    26   3.9  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   3.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   3.9  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   3.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   3.9  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.9  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.9  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   6.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   9.1  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    25   9.1  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +3

Query: 252 HYQF-HDFHSPQLEDPDFDAKP--MILLVGQYSTGKTTFIRYLL 374
           H  F +D   P L D +F A+P  +I LVG+   GK+T +R LL
Sbjct: 588 HVSFAYDPRKPVLSDINFVAQPGKVIALVGESGGGKSTIMRILL 631


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +3

Query: 264 HDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFI-----RYLLERD 383
           H  H P L+ P+FD K   +  G Y   K +FI     RY +++D
Sbjct: 838 HRLHIPWLKMPNFDFKKNQVFFGNYEDSKLSFIGSNHTRYRIDKD 882


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 300 FDAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRF 428
           F    +I+L+G+  TGKTTF +++ +     I + P+    +F
Sbjct: 372 FSDAEIIVLLGENGTGKTTFCKWMAKNSDLKISMKPQTIAPKF 414


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 303 DAKPMILLVGQYSTGKTTFIRYLLERDFP 389
           D K  + LVG    GKTT I+ +LE+  P
Sbjct: 618 DLKSRVALVGPNGAGKTTLIKLILEKVQP 646


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 318 ILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVD 488
           +++VG+ S GKTTF+   L+ +    R  P+ T D F+       +G    N  +VD
Sbjct: 121 LIVVGESSLGKTTFVNSFLQSNDTNFR--PKKTMD-FVEHKATLSDGDQKFNLTIVD 174


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 318 ILLVGQYSTGKTTFIRYLLERDF 386
           ++LVG   TGKTTF++  L  +F
Sbjct: 12  LVLVGDGGTGKTTFVKRHLTGEF 34


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 237 LPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQY 338
           LP++LH      ++P   D DFD+  M+ L+  Y
Sbjct: 53  LPIDLHKDALFANAPGKGDVDFDSVSMLQLLSDY 86


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 414  SALDQYGCPENLSLANT**MSFYRWSTVPREVSWVW 307
            S L  Y CP+  S         Y W+T PR    VW
Sbjct: 1492 STLSNYACPDCCSKEG----KLYPWNTRPRSTPSVW 1523


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 297 DFDAKPMILLVGQYSTGKTTFIRYLLERDF 386
           DF   P I++VG  S GK++ +  ++ +DF
Sbjct: 22  DFLDLPSIVVVGSQSCGKSSVLENIVGKDF 51


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 312 PMILLVGQYSTGKTTFIRYL 371
           P+ L+VGQ  +GKTT I  L
Sbjct: 28  PLTLIVGQNGSGKTTIIECL 47


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 119 KKLKRHEALIHSLHHFCIRFITNPQRLKRPPP 24
           K LK+H+  + SL     +F  NP++L    P
Sbjct: 242 KILKKHDNAVRSLEAVLAKFFKNPKKLPDDRP 273


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 29/97 (29%), Positives = 42/97 (43%)
 Frame = -3

Query: 457 PSFSSNITAINLSVVGSGPIRMPGKSLSSKYLINVVLPVEYCPTRSIMGLASKSGSSSCG 278
           PS SS+ ++ + S+  S        S SS  +I+        PT +   ++S S SSS  
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP 300

Query: 277 EWKSWNW*CSSRGNSLVL*ILLSPSTTFSIFSAFSPS 167
              S     SS  +S     L S S + S  S+FS S
Sbjct: 301 TSTSSTISSSSSSSSSFSSTLSSSSMSSS--SSFSSS 335


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 183 ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQ 284
           +N  N+VEG   +Y   L  +  HY   D    Q
Sbjct: 350 KNFSNIVEGSMEVYSAYLHIIRDHYNLSDLADVQ 383


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 331 PTRSIMGLASKSGSSSCGEWKSWNW*CSSRGNSLVL*ILLSPSTT 197
           P RS+ G +S + S +    +S++   S+  NSL+  I   PS++
Sbjct: 547 PIRSLSGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSSS 591


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 318 ILLVGQYSTGKTTFIRYL 371
           +LLVG+  TGKTT I+ L
Sbjct: 470 LLLVGETGTGKTTTIQLL 487


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 129 HQNTFIMFSWLKKEGEK 179
           H  +F+MF W KK GE+
Sbjct: 429 HYESFMMFVWKKKIGEE 445


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 297 DFDAKPM-ILLVGQYSTGKTTFIRYL 371
           D + KP  I++VG   +GKTTF++ L
Sbjct: 3   DKEKKPCAIIVVGMAGSGKTTFMQQL 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,187
Number of Sequences: 5004
Number of extensions: 54392
Number of successful extensions: 165
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)