Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d21f
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316... 146 1e-35
06_03_1194 + 28305388-28305472,28305603-28305682,28305771-283058... 144 5e-35
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 119 2e-27
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509... 33 0.19
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 32 0.44
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 29 3.1
02_04_0162 - 20441621-20441646,20441919-20442000,20442313-204424... 29 3.1
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 28 5.4
04_04_0638 - 26877640-26877825,26877954-26878160,26878866-268789... 28 7.1
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263... 28 7.1
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 27 9.4
>02_01_0436 -
3166764-3166949,3167115-3167258,3167343-3167469,
3167746-3167825,3167933-3168184,3168271-3168399,
3169039-3169088,3169221-3169323,3169429-3169548,
3169725-3169786,3169873-3169915,3169995-3170183,
3170299-3170367,3170460-3170539,3170648-3170723
Length = 569
Score = 146 bits (355), Expect = 1e-35
Identities = 65/116 (56%), Positives = 84/116 (72%)
Frame = +3
Query: 189 IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFIRY 368
+ +V++GLKR+Y KL PLE+ Y+F+DF SP L DFDAKPM++L+GQYSTGKTTFI++
Sbjct: 181 VTSVIDGLKRLYVEKLKPLEVAYRFNDFASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKH 240
Query: 369 LLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKFGNAFL 536
LL+ +PG +GPEPTTDRF+ VM E IPGN + V F L+ FG AFL
Sbjct: 241 LLQTSYPGAHVGPEPTTDRFVVVMSGSDERTIPGNTIAVQADMPFTGLTTFGGAFL 296
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQR 630
+F+CS + +L I+ VDTPG+LSGEKQR
Sbjct: 298 KFECSQMPHPLLDHITFVDTPGVLSGEKQR 327
>06_03_1194 +
28305388-28305472,28305603-28305682,28305771-28305839,
28305936-28305993,28306082-28306134,28306229-28306271,
28306360-28306421,28306914-28307027,28307183-28307285,
28307377-28307426,28308138-28308266,28308340-28308591,
28308684-28308763,28309040-28309166,28309247-28309390,
28309849-28310034
Length = 544
Score = 144 bits (349), Expect = 5e-35
Identities = 65/116 (56%), Positives = 84/116 (72%)
Frame = +3
Query: 189 IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFIRY 368
+ +V++GLK++Y KL PLE+ Y+F+DF SP L + DFDAKPM++L+GQYSTGKTTFI++
Sbjct: 156 VTSVIDGLKKLYIEKLKPLEVTYKFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKH 215
Query: 369 LLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKFGNAFL 536
LL +PG IGPEPTTDRF+ VM E IPGN + V F L+ FG AFL
Sbjct: 216 LLRTSYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVQADMPFSGLTTFGTAFL 271
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQR 630
+F+CS + +L I+ VDTPG+LSGEKQR
Sbjct: 273 KFECSQMPHPLLEHITFVDTPGVLSGEKQR 302
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 119 bits (287), Expect = 2e-27
Identities = 54/98 (55%), Positives = 73/98 (74%), Gaps = 3/98 (3%)
Frame = +3
Query: 153 SWLK-KEGEKA--ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMIL 323
+W K G+K ++ ++++GLK+ Y KL PLE YQF DF SP L DFDAKPM++
Sbjct: 109 NWFNSKSGKKIPLRSVTSIIDGLKKSYIEKLRPLEKTYQFDDFVSPLLTSSDFDAKPMVM 168
Query: 324 LVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAV 437
L+GQYSTGKTTFI++LL+ ++PG IGPEPTTDRF+ +
Sbjct: 169 LLGQYSTGKTTFIKHLLKTNYPGAHIGPEPTTDRFVVI 206
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 571 VLRGISIVDTPGILSGEKQR 630
+L I+ VDTPG+LSGEKQR
Sbjct: 254 LLDHITFVDTPGVLSGEKQR 273
>05_04_0176 +
18749945-18749969,18750186-18750751,18750876-18750944,
18752128-18752325,18752791-18752922,18753658-18753744,
18753845-18754288,18754644-18754811,18755129-18755359,
18755893-18756008,18756125-18756407
Length = 772
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +3
Query: 306 AKPMILL-VGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDE 449
++P +L+ VG++++GK+TFI LL R + ++ G PTT+ + + + +
Sbjct: 212 SEPFLLVTVGEFNSGKSTFINALLGRKY--LQEGVVPTTNEIMLLSYSD 258
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 300 FDAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPE 410
F+ +I+++G+ TGKTTFIR L R P ++G E
Sbjct: 374 FNDSQIIVMLGENGTGKTTFIRMLAGRVKPD-KVGDE 409
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 297 DFDAKPMILLVGQYSTGKTTFIRYL 371
+F +++++G+ TGKTTFIR L
Sbjct: 369 EFTDSQIVVMLGENGTGKTTFIRML 393
>02_04_0162 -
20441621-20441646,20441919-20442000,20442313-20442411,
20443391-20443438
Length = 84
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 372 LERDFPGIRIGPEPTTDRFIAVM 440
L G + PEPTTDRF+ +M
Sbjct: 27 LSLSIAGANVEPEPTTDRFVDIM 49
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 542 DSSVQLSRRTYYAGSLSLTHPVSYLERNSV 631
DS+ QL Y +GSLSL H +Y +NSV
Sbjct: 1487 DSTAQLP--LYSSGSLSLNHWAAYFHQNSV 1514
>04_04_0638 -
26877640-26877825,26877954-26878160,26878866-26878925,
26879229-26879435,26879501-26879549,26880138-26880337,
26880425-26880510,26880585-26880741,26880920-26881084,
26881817-26882053
Length = 517
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 402 GPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQ 500
G + TT+ F AV+ K V G+ V+D K +
Sbjct: 138 GHQVTTENFFAVLLGNKTAVTGGSGKVIDSKPE 170
>01_01_0325 +
2631637-2631882,2632715-2632788,2632874-2633006,
2633091-2633172,2633471-2633580,2633659-2633751,
2633854-2633904,2634013-2634105,2635257-2636129,
2636204-2636316,2636436-2636448
Length = 626
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 111 QFFLKGHQNTFIMFSWLKKEGEKA-ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQL 287
+ LKG F + E ++A N+ VVE +K + +++P +L HD L
Sbjct: 412 KILLKGSDVKFFQLEVIAYEEDEAINNVLQVVELVKSCFVGEMIPADLQGDLHDLKENPL 471
Query: 288 E 290
+
Sbjct: 472 K 472
>01_01_0548 -
4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 315 MILLVGQYSTGKTTFIRYLLERDFPGIRI 401
M LL+G S+GKTT + L R PG+++
Sbjct: 170 MTLLLGPPSSGKTTLLLALAGRLGPGLKV 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,809,058
Number of Sequences: 37544
Number of extensions: 343635
Number of successful extensions: 1123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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