Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d21f
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05) 32 0.45
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 31 0.78
SB_31793| Best HMM Match : Acyltransferase (HMM E-Value=0.00022) 31 0.78
SB_6134| Best HMM Match : DUF1099 (HMM E-Value=5.5) 30 1.8
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18) 30 1.8
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022) 29 2.4
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19) 29 3.1
SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 28 5.5
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 28 5.5
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 28 5.5
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 28 7.2
SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2) 28 7.2
SB_43707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 9.6
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 27 9.6
SB_19250| Best HMM Match : SOCS_box (HMM E-Value=1) 27 9.6
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 27 9.6
SB_58111| Best HMM Match : fn3 (HMM E-Value=0) 27 9.6
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 27 9.6
>SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 438 MFDEKEGVIPGNALVVDPKKQFRPLSKFGNAFLD 539
M + + VIPGNAL+VDP KQFR LS FGNAFL+
Sbjct: 1 MHGDSQQVIPGNALIVDPNKQFRSLSSFGNAFLN 34
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RF CS + +DVL I+IVDTPGILSGEKQ V
Sbjct: 35 RFCCSELPNDVLNSITIVDTPGILSGEKQSV 65
>SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05)
Length = 202
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 312 PMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGV 461
P ++++G + GK+TF+ LL+ + + + P T R + + + E V
Sbjct: 64 PSVIVIGNQNCGKSTFLNVLLKGKY--LPVHENPCTSRIVRISYSESNFV 111
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 31.1 bits (67), Expect = 0.78
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Frame = +3
Query: 183 ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFI 362
E+ + ++ L++ YK + ++ + + + E+ K IL+VGQ ++GK++ I
Sbjct: 51 EDAQKIISSLQKAYKDDMNSDVINAFISEQETQKFEE-FVSKKAAILVVGQTNSGKSSLI 109
Query: 363 RYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGV-IPG-NALVVDPKKQF 503
LL + + P T R + + + + V + G N V K+ F
Sbjct: 110 NELLGGTY--LPTAEIPCTSRIVRICYSDNNYVEVQGPNGECVQGKQSF 156
>SB_31793| Best HMM Match : Acyltransferase (HMM E-Value=0.00022)
Length = 435
Score = 31.1 bits (67), Expect = 0.78
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +3
Query: 165 KEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQYST 344
K G + + +VVEGL + ++P+ + Y+ + PD+ P+ GQY
Sbjct: 255 KSGLLSVVVNSVVEGL--VPDVLIVPVNISYEKQKVRNSNTYPPDYQDLPVFRSFGQYLN 312
Query: 345 GKTTFIRYL--LERDFPGIRIGPEPTTDRF 428
+ YL LE +P +G + F
Sbjct: 313 TTVYYRIYLQILETSYPRELLGEAKRPETF 342
>SB_6134| Best HMM Match : DUF1099 (HMM E-Value=5.5)
Length = 743
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 339 STGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEG-----VIPGNALVVDPKKQF 503
S G IRYL+E+ P +R GP+ D + + E+E V+P +VDP +++
Sbjct: 85 SAGVYQEIRYLVEQ--PVMR-GPDINDDGPVWWVSHERESLRAKAVLPPVLEMVDPDRRY 141
Query: 504 RPLSKFGNAFLDPIPVFNCHVGRT 575
R + G A +P+ GR+
Sbjct: 142 RLFTVVGKAHAEPVAPITEEEGRS 165
>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1761
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 279 PQLEDPDFDAKPMILLVGQYSTGKTTFIRYLLER 380
P++ED F I++VG +GKTT+++ LL +
Sbjct: 1442 PRMEDRRFRCPCAIMVVGPSQSGKTTWVQSLLRQ 1475
>SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)
Length = 323
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -3
Query: 547 GIGSRKALPNLLNGRNCFFGSTTNALPGITPSFSS-NITAINLSVVGSGPIRMPGKSLSS 371
GI + +LP + ++ S T++LPGI+ + SS I+A + S S +PGKS
Sbjct: 101 GISATHSLPGISATKSLPGISATHSLPGISATHSSPGISATHSSPGISATHSLPGKS--- 157
Query: 370 KYLINVVLPVEYCPTRSIMGLAS 302
+ +P Y T S G+++
Sbjct: 158 ----RLHIPTRYKSTHSSPGISA 176
>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
Length = 1681
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 300 FDAKPMILLVGQYSTGKTTFIRYLLERDFPGIRI 401
FD P +LLVGQ TGK+ I+ ++ +P RI
Sbjct: 920 FDGYP-VLLVGQSGTGKSALIQNMVSPRYPYSRI 952
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 297 DFDAKPMILLVGQYSTGKTTFIRYL 371
+F +I+++G+ TGKTTFIR L
Sbjct: 341 EFTDSEIIVMLGENGTGKTTFIRML 365
>SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -3
Query: 541 GSRKALPNLLNGRNCFFGSTTNALPGITPSFSSNITAINLSVVGSGPIRMPGKSLSSKYL 362
G R PN++ GR FF + L TP N+ L++ P RM G+ LS
Sbjct: 36 GGRYIPPNIVLGRRVFFAAKNVDLAEDTPDGKRNLHGTALAIY--KPHRM-GRGLSCHTT 92
Query: 361 INVVLPVEYCPTR 323
++ CP R
Sbjct: 93 TKKLIDHAACPRR 105
>SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)
Length = 811
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 156 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQ 260
W ++EG +A +V GL+ I + L+PL HY+
Sbjct: 775 WRRREGARARR-STLVVGLRAIERGDLIPLLQHYE 808
>SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -2
Query: 461 YALFFVEHNGYKSICSRLWTNTDARKISL*QIPDKCRFTGGVLSHEKYHGFGIEIW 294
Y+ + N YK I +LW+ + ++ K TGG+ S + +E+W
Sbjct: 495 YSYTYTYTNAYKIIADQLWSAMHEVAGAAKRLTPKVSSTGGLCSFDDIANRSLELW 550
>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 254
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 156 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
W +++G + L++ ++ KL+ ++ HSP L PDF
Sbjct: 50 WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAQ-HSPDLNPPDF 97
>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 1242
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -3
Query: 469 PGITPSFSSNITAINLSVVGSGPIRMPGKSLSSKYLINVVLPVEYCPTRSIMGLASKSGS 290
P ITP+ + N+ INL SGP + SS + +P P+ + + + +
Sbjct: 530 PAITPTHADNLLTINLPSAKSGP-EITSPQASSILTVTSTMPRLPVPSEMVEARSLRLAA 588
Query: 289 SSCG 278
++ G
Sbjct: 589 TATG 592
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 309 KPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDR 425
KP++ +VG+ + GK+T + +L R ++ P T DR
Sbjct: 21 KPVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDR 59
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 156 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
W +++G + L++ ++ KL+ ++ HSP L PDF
Sbjct: 274 WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAP-HSPDLNPPDF 321
>SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)
Length = 628
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -2
Query: 452 FFVEHNGYKSICSRLWTNTDARKISL*QIPDKCRFTGGVLSHEKYHGFGIEIWI---FEL 282
F +++NG + I + LW+ A S P C GG+ E +H + + + +
Sbjct: 481 FLLDYNGIRMISTELWSEPGA-VFSTDACPVGC---GGICGAEYFHAYFPDFILSQELSI 536
Query: 281 RRMEIVELVVQLK 243
+E++ +VV +K
Sbjct: 537 NALELLTIVVAVK 549
>SB_43707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 37 LSLCGFVINLIQKWCSECISASCLFS 114
L +CG V +Q WC C + CLF+
Sbjct: 19 LPICGDVFLAVQGWCGAC--SGCLFT 42
>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 156 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
W +++G + L++ ++ KL+ ++ HSP L PDF
Sbjct: 50 WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAP-HSPDLNPPDF 97
>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 156 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
W +++G + L++ ++ KL+ ++ HSP L PDF
Sbjct: 50 WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAP-HSPDLNPPDF 97
>SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1176
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 144 IMFSWLKKEGEKAENIENVVEGLKRI 221
I+F W K+ + AE++E+ GL+R+
Sbjct: 603 ILFFWYKRRHKHAEDLEHSPSGLRRL 628
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 463 ITPSFSSNITAINLSVVGSGPIRMPGKSLSSKYLINVVLPVEY 335
++ S N I L+V G +R G SLSS L VLP Y
Sbjct: 218 LSESEKENSLNIELTVEGKPTLRKSGASLSSSSLSIPVLPSPY 260
>SB_19250| Best HMM Match : SOCS_box (HMM E-Value=1)
Length = 252
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 391 PGKSLSSKYLINVVLPVEYCP-TRSIMGLASKS 296
PG LSS V++P YCP S++ L+ KS
Sbjct: 153 PGSLLSSSRKSTVLIPQVYCPYPASLLSLSCKS 185
>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 153
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 156 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
W +++G + L++ ++ KL+ ++ HSP L PDF
Sbjct: 50 WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWVP-HSPDLNPPDF 97
>SB_58111| Best HMM Match : fn3 (HMM E-Value=0)
Length = 934
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 459 VIPGNALVVDPKKQFRPLSKFGNAFLD 539
+ PG AL+V P++ S F NA LD
Sbjct: 591 IAPGVALIVPPQESQESSSAFSNAILD 617
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 289 SSCGEWKSWNW*CSSRGN 236
S C EWK W W C+ G+
Sbjct: 738 SDCPEWKGWGW-CNDGGH 754
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,373,551
Number of Sequences: 59808
Number of extensions: 397751
Number of successful extensions: 1302
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -