Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d21f
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 213 7e-56
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 213 7e-56
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 213 7e-56
AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor med... 213 7e-56
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 213 7e-56
AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor med... 213 7e-56
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 213 7e-56
AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor med... 213 7e-56
AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 213 9e-56
U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon g... 32 0.39
AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein. 32 0.39
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 30 1.2
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 29 3.7
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 28 4.8
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 28 4.8
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 28 6.4
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 27 8.4
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 27 8.4
U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related... 27 8.4
U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related... 27 8.4
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 27 8.4
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 27 8.4
U00033-8|AAC48294.1| 315|Caenorhabditis elegans Hypothetical pr... 27 8.4
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 27 8.4
AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-relat... 27 8.4
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 27 8.4
>AF357878-1|AAK27716.1| 589|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform I protein.
Length = 589
Score = 213 bits (521), Expect = 7e-56
Identities = 103/139 (74%), Positives = 115/139 (82%), Gaps = 3/139 (2%)
Frame = +3
Query: 132 QNTFIMFSWLKKEGEKAEN---IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
+ T MFSWL + K +N +E V EGL++IYK KLLPLE ++FHDFHSP L+DPDF
Sbjct: 30 KKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDF 89
Query: 303 DAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALV 482
DAKPMILLVGQYSTGKTTFIRYLLE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALV
Sbjct: 90 DAKPMILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALV 149
Query: 483 VDPKKQFRPLSKFGNAFLD 539
VD KKQFR LS FGNAFL+
Sbjct: 150 VDAKKQFRALSGFGNAFLN 168
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RFQCST+ + VL ++IVDTPGILSGEKQR+
Sbjct: 169 RFQCSTLPNQVLESVTIVDTPGILSGEKQRI 199
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 213 bits (521), Expect = 7e-56
Identities = 103/139 (74%), Positives = 115/139 (82%), Gaps = 3/139 (2%)
Frame = +3
Query: 132 QNTFIMFSWLKKEGEKAEN---IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
+ T MFSWL + K +N +E V EGL++IYK KLLPLE ++FHDFHSP L+DPDF
Sbjct: 276 KKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDF 335
Query: 303 DAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALV 482
DAKPMILLVGQYSTGKTTFIRYLLE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALV
Sbjct: 336 DAKPMILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALV 395
Query: 483 VDPKKQFRPLSKFGNAFLD 539
VD KKQFR LS FGNAFL+
Sbjct: 396 VDAKKQFRALSGFGNAFLN 414
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RFQCST+ + VL ++IVDTPGILSGEKQR+
Sbjct: 415 RFQCSTLPNQVLESVTIVDTPGILSGEKQRI 445
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 213 bits (521), Expect = 7e-56
Identities = 103/139 (74%), Positives = 115/139 (82%), Gaps = 3/139 (2%)
Frame = +3
Query: 132 QNTFIMFSWLKKEGEKAEN---IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
+ T MFSWL + K +N +E V EGL++IYK KLLPLE ++FHDFHSP L+DPDF
Sbjct: 12 KKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDF 71
Query: 303 DAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALV 482
DAKPMILLVGQYSTGKTTFIRYLLE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALV
Sbjct: 72 DAKPMILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALV 131
Query: 483 VDPKKQFRPLSKFGNAFLD 539
VD KKQFR LS FGNAFL+
Sbjct: 132 VDAKKQFRALSGFGNAFLN 150
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RFQCST+ + VL ++IVDTPGILSGEKQR+
Sbjct: 151 RFQCSTLPNQVLESVTIVDTPGILSGEKQRI 181
>AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 213 bits (521), Expect = 7e-56
Identities = 103/139 (74%), Positives = 115/139 (82%), Gaps = 3/139 (2%)
Frame = +3
Query: 132 QNTFIMFSWLKKEGEKAEN---IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
+ T MFSWL + K +N +E V EGL++IYK KLLPLE ++FHDFHSP L+DPDF
Sbjct: 12 KKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDF 71
Query: 303 DAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALV 482
DAKPMILLVGQYSTGKTTFIRYLLE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALV
Sbjct: 72 DAKPMILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALV 131
Query: 483 VDPKKQFRPLSKFGNAFLD 539
VD KKQFR LS FGNAFL+
Sbjct: 132 VDAKKQFRALSGFGNAFLN 150
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RFQCST+ + VL ++IVDTPGILSGEKQR+
Sbjct: 151 RFQCSTLPNQVLESVTIVDTPGILSGEKQRI 181
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 213 bits (521), Expect = 7e-56
Identities = 103/139 (74%), Positives = 115/139 (82%), Gaps = 3/139 (2%)
Frame = +3
Query: 132 QNTFIMFSWLKKEGEKAEN---IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
+ T MFSWL + K +N +E V EGL++IYK KLLPLE ++FHDFHSP L+DPDF
Sbjct: 227 KKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDF 286
Query: 303 DAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALV 482
DAKPMILLVGQYSTGKTTFIRYLLE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALV
Sbjct: 287 DAKPMILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALV 346
Query: 483 VDPKKQFRPLSKFGNAFLD 539
VD KKQFR LS FGNAFL+
Sbjct: 347 VDAKKQFRALSGFGNAFLN 365
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RFQCST+ + VL ++IVDTPGILSGEKQR+
Sbjct: 366 RFQCSTLPNQVLESVTIVDTPGILSGEKQRI 396
>AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 213 bits (521), Expect = 7e-56
Identities = 103/139 (74%), Positives = 115/139 (82%), Gaps = 3/139 (2%)
Frame = +3
Query: 132 QNTFIMFSWLKKEGEKAEN---IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
+ T MFSWL + K +N +E V EGL++IYK KLLPLE ++FHDFHSP L+DPDF
Sbjct: 54 KKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDF 113
Query: 303 DAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALV 482
DAKPMILLVGQYSTGKTTFIRYLLE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALV
Sbjct: 114 DAKPMILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALV 173
Query: 483 VDPKKQFRPLSKFGNAFLD 539
VD KKQFR LS FGNAFL+
Sbjct: 174 VDAKKQFRALSGFGNAFLN 192
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RFQCST+ + VL ++IVDTPGILSGEKQR+
Sbjct: 193 RFQCSTLPNQVLESVTIVDTPGILSGEKQRI 223
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 213 bits (521), Expect = 7e-56
Identities = 103/139 (74%), Positives = 115/139 (82%), Gaps = 3/139 (2%)
Frame = +3
Query: 132 QNTFIMFSWLKKEGEKAEN---IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
+ T MFSWL + K +N +E V EGL++IYK KLLPLE ++FHDFHSP L+DPDF
Sbjct: 276 KKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDF 335
Query: 303 DAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALV 482
DAKPMILLVGQYSTGKTTFIRYLLE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALV
Sbjct: 336 DAKPMILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALV 395
Query: 483 VDPKKQFRPLSKFGNAFLD 539
VD KKQFR LS FGNAFL+
Sbjct: 396 VDAKKQFRALSGFGNAFLN 414
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RFQCST+ + VL ++IVDTPGILSGEKQR+
Sbjct: 415 RFQCSTLPNQVLESVTIVDTPGILSGEKQRI 445
>AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform c protein.
Length = 589
Score = 213 bits (521), Expect = 7e-56
Identities = 103/139 (74%), Positives = 115/139 (82%), Gaps = 3/139 (2%)
Frame = +3
Query: 132 QNTFIMFSWLKKEGEKAEN---IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 302
+ T MFSWL + K +N +E V EGL++IYK KLLPLE ++FHDFHSP L+DPDF
Sbjct: 30 KKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDF 89
Query: 303 DAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALV 482
DAKPMILLVGQYSTGKTTFIRYLLE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALV
Sbjct: 90 DAKPMILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALV 149
Query: 483 VDPKKQFRPLSKFGNAFLD 539
VD KKQFR LS FGNAFL+
Sbjct: 150 VDAKKQFRALSGFGNAFLN 168
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RFQCST+ + VL ++IVDTPGILSGEKQR+
Sbjct: 169 RFQCSTLPNQVLESVTIVDTPGILSGEKQRI 199
>AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform f protein.
Length = 555
Score = 213 bits (520), Expect = 9e-56
Identities = 102/134 (76%), Positives = 113/134 (84%), Gaps = 3/134 (2%)
Frame = +3
Query: 147 MFSWLKKEGEKAEN---IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPM 317
MFSWL + K +N +E V EGL++IYK KLLPLE ++FHDFHSP L+DPDFDAKPM
Sbjct: 1 MFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDFDAKPM 60
Query: 318 ILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKK 497
ILLVGQYSTGKTTFIRYLLE DFPGIRIGPEPTTDRFIAVM ++EG IPGNALVVD KK
Sbjct: 61 ILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKK 120
Query: 498 QFRPLSKFGNAFLD 539
QFR LS FGNAFL+
Sbjct: 121 QFRALSGFGNAFLN 134
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 541 RFQCSTVTSDVLRGISIVDTPGILSGEKQRV 633
RFQCST+ + VL ++IVDTPGILSGEKQR+
Sbjct: 135 RFQCSTLPNQVLESVTIVDTPGILSGEKQRI 165
>U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon gene
protein 2 protein.
Length = 355
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 276 SPQLEDPDFDAKPMILLVGQYSTGKTTFIRYL 371
SPQ P+ + KP IL++G +GKTTF++ L
Sbjct: 20 SPQT-GPNVNQKPSILVLGMAGSGKTTFVQRL 50
>AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein.
Length = 355
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 276 SPQLEDPDFDAKPMILLVGQYSTGKTTFIRYL 371
SPQ P+ + KP IL++G +GKTTF++ L
Sbjct: 20 SPQT-GPNVNQKPSILVLGMAGSGKTTFVQRL 50
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 437 NGYKSICSRLWTNTDAR-KISL*QIPDKCRFTGGVLSHEKYHGF 309
NGY+ IC LWT+TD ++ P C + G + +E+Y+ +
Sbjct: 340 NGYQCICGPLWTDTDCETPVASACTPSPC-WNGICVLNEQYNTY 382
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 267 DFHSPQLEDPDFDAKPMILLVGQYSTGKTTFIRYL 371
+FH +E DF +I+++G+ TGKTT I+ +
Sbjct: 368 NFHL-DVEAGDFSDSEIIVMLGENGTGKTTMIKMM 401
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 318 ILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKE 455
+ + G GKTTF+ L+E+ P E RF ++F EK+
Sbjct: 135 VAIAGHLHHGKTTFLDCLMEQTHPEF-YRAEDADARFTDILFIEKQ 179
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 318 ILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKE 455
+ + G GKTTF+ L+E+ P E RF ++F EK+
Sbjct: 10 VAIAGHLHHGKTTFLDCLMEQTHPEF-YRAEDADARFTDILFIEKQ 54
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 162 KKEGEKAENIENVVEGLKRIYKTKLLPLELHYQ 260
KKE E+AE + E L++ K K LE HYQ
Sbjct: 748 KKEAEEAEKRKKKEEQLEKEKKEKREALEKHYQ 780
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 162 KKEGEKAENIENVVEGLKRIYKTKLLPLELHYQ 260
KKE E+AE + E L++ K K LE HYQ
Sbjct: 748 KKEAEEAEKRKKKEEQLEKEKKEKREALEKHYQ 780
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 276 SPQLEDPDFDAKPMILLVGQYSTGKTTFI-RY 368
+P D +FD +L++G S GKT+F+ RY
Sbjct: 11 TPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRY 42
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 276 SPQLEDPDFDAKPMILLVGQYSTGKTTFI-RY 368
+P D +FD +L++G S GKT+F+ RY
Sbjct: 11 TPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRY 42
>U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related
protein protein1, isoform a protein.
Length = 705
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 312 PMILLVGQYSTGKTTFIRYLLERDF 386
P I++VG S GK++ + L+ RDF
Sbjct: 28 PQIVVVGSQSAGKSSVLENLVGRDF 52
>U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related
protein protein1, isoform b protein.
Length = 712
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 312 PMILLVGQYSTGKTTFIRYLLERDF 386
P I++VG S GK++ + L+ RDF
Sbjct: 28 PQIVVVGSQSAGKSSVLENLVGRDF 52
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 276 SPQLEDPDFDAKPMILLVGQYSTGKTTFI-RY 368
+P D +FD +L++G S GKT+F+ RY
Sbjct: 11 TPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRY 42
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 276 SPQLEDPDFDAKPMILLVGQYSTGKTTFI-RY 368
+P D +FD +L++G S GKT+F+ RY
Sbjct: 25 TPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRY 56
>U00033-8|AAC48294.1| 315|Caenorhabditis elegans Hypothetical
protein F37C12.2 protein.
Length = 315
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 354 TFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGV 461
TF+R + E + +++ P +R + +M EK+G+
Sbjct: 23 TFVRRIREEEAKEVKVEPPKPVERTVLMMRREKQGI 58
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 282 QLEDPDFDAKPMILLVGQYSTGKTTFIRYLLERD-FPGIRIGPE 410
++E D D + ++L+G GKT R L +++ I IGPE
Sbjct: 807 EVEHQDDDLENPLVLIGPSGVGKTALFRALAKQENMRIISIGPE 850
>AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-related
protein protein.
Length = 705
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 312 PMILLVGQYSTGKTTFIRYLLERDF 386
P I++VG S GK++ + L+ RDF
Sbjct: 28 PQIVVVGSQSAGKSSVLENLVGRDF 52
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 276 SPQLEDPDFDAKPMILLVGQYSTGKTTFI-RY 368
+P D +FD +L++G S GKT+F+ RY
Sbjct: 11 TPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRY 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,389,527
Number of Sequences: 27780
Number of extensions: 300666
Number of successful extensions: 923
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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