Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d19f
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               32   0.43 
SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.57 
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            31   0.99 
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          29   3.0  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               29   3.0  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        28   5.3  
SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)                     28   5.3  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -1

Query: 360 FSPSAVEP---ASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSP 235
           FSPS + P   +  +PG TSP++ +  A   G S S+ +F  SSP
Sbjct: 380 FSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSP 424


>SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 36  ATPQPTCQAHTVGSPLA*ASAASHQVPSGSVPMLTV---MRSTREELTTKVTSFRPKSFR 206
           A    + ++ T+G P+  A+   H+ P GS    TV       R +L T++ +F PK  +
Sbjct: 278 AVKSVSIKSKTIGIPVVRAAIQDHECPKGSRKSETVPEFFPRKRTKLETELGAFSPKEVK 337

Query: 207 P 209
           P
Sbjct: 338 P 338


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 36   ATPQPTCQAHTVGSPLA*ASAASHQ----VPSGSVPMLTVMRSTREELTTKVTSFRPKSF 203
            A P P+ +  T   P      A+ Q     PS + P  TV   TREE TTK T+   K+ 
Sbjct: 1377 AKPSPSRKHQTTTWPQTTQEMAAVQQTTEAPSTTAPPTTVEDKTREEATTKPTTTTRKTT 1436

Query: 204  RPKT 215
             P T
Sbjct: 1437 IPTT 1440


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 138 TVMRSTREELTTKVTSFRPKSFRPKTRVIFLSV 236
           T M   +EEL++KV    P+    KT+V FLSV
Sbjct: 297 TSMDHIKEELSSKVMDLAPEGLTDKTKVPFLSV 329


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +2

Query: 170  HEGDIVPAKVIPTKNACYISFGGEEVLKDQFEVLVPSMFA----WQFSTNGEVPP-GAVE 334
            H GD++P++V  ++NA + +    E + DQ    +   FA       ST+  + P G +E
Sbjct: 4443 HHGDVIPSEVFTSENA-HEALSVSESILDQIGKFINENFAESCILALSTSDSLYPFGRIE 4501

Query: 335  AGSTA 349
            AG +A
Sbjct: 4502 AGESA 4506


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 305 NGEVPPGAVEAGSTADGEKLYFGRVNHDGCTTPGKIHPSH 424
           NG +    + A S+  G +   GR+N  G   P KIH  H
Sbjct: 736 NGAIKASKISATSSQTGAQPSQGRLNGGGAWCPDKIHHVH 775


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 233 GGEEVLKDQFEVLVPSMFAWQF-STNGEVPPGAVEAGSTADGEKL 364
           GG E + D+  V   +   W   +  G++PPG    G   DG +L
Sbjct: 38  GGNEGIVDELHVYNTATNQWFVPAVRGDIPPGCAAYGFICDGTRL 82


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 36  ATPQPTCQAHTVGS-PLA*ASAASHQVPSGSVPMLTVMRSTREELTTKVTSFRP 194
           A PQ       V S PLA  ++ S+  P   VP+ T+  ST  E+TT      P
Sbjct: 214 ALPQAAIVQDGVPSHPLAPFTSESNSRPETKVPITTIGASTSAEVTTSQRDLMP 267


>SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)
          Length = 754

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 30  RQATPQPTCQAHTVGSPLA*ASAASHQVPSGSVPMLTVMRSTREELTTKVTSFRPKSFRP 209
           R  +P  +C + ++    + +S  S+ V   S+P L + R T  E    VT +RP S RP
Sbjct: 686 RVPSPCRSCDSLSLHRESSFSSRFSN-VMGASLPSLRLDRETPPE--RGVTEYRPGSSRP 742

Query: 210 KTRV 221
           K R+
Sbjct: 743 KKRI 746


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,799,882
Number of Sequences: 59808
Number of extensions: 478326
Number of successful extensions: 1651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)