Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d19f
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 4.6
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 28 4.6
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 28 4.6
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 4.6
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 27 8.1
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 27 8.1
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 27 8.1
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 354 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1702 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1741
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 354 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 354 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 354 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1702 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1741
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 354 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 354 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 34 KRRHNRHARHIPLGPR-LLKPAQHPTRCPQGRY 129
+RR NR A+ + + PR + + RCPQ RY
Sbjct: 34 RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRY 66
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 34 KRRHNRHARHIPLGPR-LLKPAQHPTRCPQGRY 129
+RR NR A+ + + PR + + RCPQ RY
Sbjct: 34 RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRY 66
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 354 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1794 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1833
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 357 SPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
SPS+ +S P +SP E+ Q S S S T+ PP
Sbjct: 231 SPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPP 272
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 357 SPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
SPS+ +S P +SP E+ Q S S S T+ PP
Sbjct: 231 SPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPP 272
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 357 SPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 232
SPS+ +S P +SP E+ Q S S S T+ PP
Sbjct: 231 SPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPP 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,318,017
Number of Sequences: 27780
Number of extensions: 354487
Number of successful extensions: 1030
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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