Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d19f
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing pr...    28   4.3  
At3g46850.1 68416.m05085 subtilase family protein contains simil...    28   4.3  
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    27   7.5  
At2g32140.1 68415.m03928 disease resistance protein (TIR class),...    27   7.5  
At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ...    27   10.0 

>At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 306

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 288 PGSSRQMAKSRPALSRLAPQLTGRSFTSAGSIMTDALRLARSTR 419
           PG+ RQ +        LA ++  R  T AGS   D  R+   +R
Sbjct: 56  PGTGRQFSSLEAIHRHLAGEVNDRRLTRAGSFFQDKTRVYEGSR 99


>At3g46850.1 68416.m05085 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo];
          Length = 736

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 163 SSRVDLITVSIGTDPEGTWWDAALA 89
           + +VD+ITVS+G D  GT+ +  LA
Sbjct: 266 ADKVDIITVSLGADAVGTFEEDTLA 290


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
          protein / FH2 domain-containing protein contains formin
          homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 7  FFFFLVVEDKRRHNRHARHIPLGP 78
          FFF     D+R H+RH  H P  P
Sbjct: 13 FFFSSSTADQRHHSRHLLHQPFFP 36


>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 197 VIPTKNACYISFGGEEVLKDQFEVLVPSM 283
           VIPT    +ISF G+E+ K     LVP++
Sbjct: 16  VIPTGPQVFISFRGKELRKGFISFLVPAL 44


>At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative
            similar to RNA-directed RNA polymerase [Lycopersicon
            esculentum] gi|4038592|emb|CAA71421
          Length = 1133

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 143  DEIYAGRAHHEGDIVPAKVIPTKNACYISFGGEEVLKDQFEVLVPS---MFAWQFSTNGE 313
            D+ Y  +   E  +V  KV+ TKN C +  G   VL   +EV       +    F   GE
Sbjct: 761  DQSYFRKIDEETSVVIGKVVVTKNPC-LHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGE 819

Query: 314  VPPGAVEAGSTADGEKLYFGRVNHDGCTTPGKIHP 418
             P     +G   DG++ +   V+ D    P ++ P
Sbjct: 820  RPHPNECSGGDLDGDQFF---VSWDEKIIPSEMDP 851


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,257
Number of Sequences: 28952
Number of extensions: 327257
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)