Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d17r
(381 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 140 1e-33
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 140 1e-33
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 140 1e-33
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 140 1e-33
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 140 1e-33
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 64 2e-10
U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 29 3.8
CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 29 3.8
BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 29 3.8
BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 29 3.8
AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 29 3.8
AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 29 3.8
L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein. 29 6.6
AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation ... 29 6.6
AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial translati... 29 6.6
BC008573-1|AAH08573.1| 48|Homo sapiens HIG2 protein protein. 28 8.7
AY008271-1|AAG16639.1| 1026|Homo sapiens helicase SMARCAD1 protein. 28 8.7
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 140 bits (340), Expect = 1e-33
Identities = 74/113 (65%), Positives = 87/113 (76%)
Frame = -2
Query: 347 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 168
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 167 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQ 9
A YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 140 bits (340), Expect = 1e-33
Identities = 74/113 (65%), Positives = 87/113 (76%)
Frame = -2
Query: 347 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 168
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 167 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQ 9
A YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 140 bits (340), Expect = 1e-33
Identities = 74/113 (65%), Positives = 87/113 (76%)
Frame = -2
Query: 347 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 168
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 167 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQ 9
A YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 140 bits (340), Expect = 1e-33
Identities = 74/113 (65%), Positives = 87/113 (76%)
Frame = -2
Query: 347 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 168
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 167 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQ 9
A YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 140 bits (340), Expect = 1e-33
Identities = 74/113 (65%), Positives = 87/113 (76%)
Frame = -2
Query: 347 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 168
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 167 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQ 9
A YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRKAAA+
Sbjct: 51 APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK 103
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = -2
Query: 137 LKVSKDKRALKFLKRRLGTHIRAKRKREELSN 42
LKVSKDKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 1 LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32
>U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8
protein.
Length = 400
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 293 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 141
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein.
Length = 405
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 293 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 141
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein
protein.
Length = 400
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 293 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 141
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 293 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 141
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 293 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 141
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8
variant protein.
Length = 481
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 293 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 141
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343
>L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein.
Length = 727
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -2
Query: 215 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 36
K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516
Query: 35 AQMRK 21
+ + K
Sbjct: 517 SVIIK 521
>AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation
factor 2 protein.
Length = 727
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -2
Query: 215 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 36
K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516
Query: 35 AQMRK 21
+ + K
Sbjct: 517 SVIIK 521
>AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial
translation-initiation factor 2 protein.
Length = 727
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -2
Query: 215 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 36
K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516
Query: 35 AQMRK 21
+ + K
Sbjct: 517 SVIIK 521
>BC008573-1|AAH08573.1| 48|Homo sapiens HIG2 protein protein.
Length = 48
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 155 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 42
+R+ + VS+D+ A+ L H++ K+KR+ L N
Sbjct: 8 RRSFAFVAVSRDRTAVPSLGHSARLHLKKKKKRKSLFN 45
>AY008271-1|AAG16639.1| 1026|Homo sapiens helicase SMARCAD1 protein.
Length = 1026
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 200 VRDLVREVVGHAQYEKRAMELLKVSKDKRALKF-LKRRLGTHIRAKRKREELSNVLAQMR 24
+R + EV+ +K +EL +S+ + L L RL I K E+ NV+ Q+R
Sbjct: 720 LRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLR 779
Query: 23 KAA 15
K A
Sbjct: 780 KMA 782
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,277,391
Number of Sequences: 237096
Number of extensions: 953430
Number of successful extensions: 1945
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1940
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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