Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d16f
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.016
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     35   0.049
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)                     33   0.15 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     33   0.15 
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)                33   0.26 
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)                33   0.26 
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.46 
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   7.4  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_35220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 5/148 (3%)
 Frame = +2

Query: 158  ILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAV-- 331
            I N   Q C G ++T    ++ A C   +  +PA  ++  G+  R+ P     +  ++  
Sbjct: 649  IYNSGRQFCGGTLVTPEWVITAAHCVVDK--NPASIQVRLGAQDRTSPDPSVEMRISIRS 706

Query: 332  --NHPEF-SEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQ 502
              NHP++ S +    D++++R++                            + GWGT   
Sbjct: 707  IHNHPDYGSPKRSSNDIALLRLSRPTILTHRINLACMPNDTVHFPNGTMCYITGWGTLSS 766

Query: 503  GGSVSDGNLHKLELIVTNKENCREQYKG 586
            GGS  +  L++  + +  +  C   Y G
Sbjct: 767  GGSQPEA-LNQAVVPLRTRSECERSYPG 793


>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
 Frame = +2

Query: 335 HPEFSEENYDKDVSIVRVTHAIHFGPNXX---XXXXXXXXXXXXXXXXXDLLGWGTTVQG 505
           HP +S ++YD D++++R+   + F                          + GWG     
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTFTDYVKPICLPSAASDYAQLQANVSGTISGWGKRKLW 258

Query: 506 GSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFLRRF 628
                  LH+  + + + + CR+ +   D +VT N F   F
Sbjct: 259 RDRVANRLHEATVPIVDIQTCRKAHP--DYIVTANMFCAGF 297


>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 968

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +2

Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA---VNHPEFSE 352
           C G +++    ++ A C  G  + P+Y +++ G   R+ P      H     + HP ++ 
Sbjct: 93  CGGSLVSPTWVVTAAHCIAGSSHTPSY-KVVTGEHIRNSPEGTEQTHDVKRIITHPTYNS 151

Query: 353 ENYDKDVSIVRVTHAI 400
                D++++ ++  +
Sbjct: 152 PQLSNDIALIELSSPV 167


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)
 Frame = +2

Query: 143 EVFLPILNQWFQQCAGIVLTNYHYLSTATCF--HGEFYDPAYRRIIAGSSRRSE------ 298
           E+ L   N     C G ++  Y  L+++ CF  +         R+     RR E      
Sbjct: 2   EIILKTPNLTTHYCGGSLIDPYWILTSSHCFWTYNNISTQFEIRLGEHDERRIEGYEEII 61

Query: 299 PGEISYVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDL 478
            G+  Y+H  +   +      D DV+++++     F                       +
Sbjct: 62  QGDQLYIHPGLVVGDLISPG-DYDVALIKLKRPAVFHKRVHSVCLPSVTANLTTGTKCFV 120

Query: 479 LGWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFLRRFGPG 637
            GWG T +G   S   L++LE+ + +KE C      ++  + D  F   F  G
Sbjct: 121 TGWGKTAEGSPYSP-VLNELEVDIVSKEVCNAN-DSYNGTINDRYFCAGFPQG 171


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 3/144 (2%)
 Frame = +2

Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPG---EISYVHFAVNHPEFSE 352
           C G V++ +  L+ A C   E    +  ++  G  R        ++  V   ++H  +S 
Sbjct: 574 CGGNVISPWWVLTAAHCVQDE--RASNIKLTMGEWRLFNVDGTEQVIPVERIISHANYSY 631

Query: 353 ENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLH 532
              D D +++++T  ++F                       + GWG+T   GS S   L 
Sbjct: 632 NTVDYDYALLKLTRPLNF--TQYVQPVCLPDSDFPAGTLCYVTGWGSTNYRGSPSPNYLQ 689

Query: 533 KLELIVTNKENCREQYKGHDRVVT 604
           ++ L + N   C   Y    R +T
Sbjct: 690 EVGLPLVNHSQCHATYLTASRKIT 713


>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
          Length = 275

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 337 MVNSK-VNIRYFTGLTATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTSALLE 173
           M+NS+ +N   FTG   TGR    AT   +V+  +E GS   ++V+ + +    +E
Sbjct: 215 MINSRGINALTFTGSLETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVE 270


>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
          Length = 333

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 143 EVFLPILNQW--FQQCAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRSEPGEIS 313
           E F+  +  W    QC+G ++   H ++ A C H G+++      I+ G S  S   E+ 
Sbjct: 138 EPFVSSVKLWSDVMQCSGTLIGPCHVITAAHCIHNGKWFVSPLTAILVGVSNTSSTDELD 197

Query: 314 YVHFAV 331
           Y  FAV
Sbjct: 198 Y--FAV 201


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 20/92 (21%), Positives = 36/92 (39%)
 Frame = +2

Query: 329 VNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGG 508
           ++H  +S    D D +++++T  ++F                       + GWG+T   G
Sbjct: 375 ISHANYSYNTVDYDYALLKLTRPLNF--TQYVQPVCLPDSDFPAGTLCYVTGWGSTNYRG 432

Query: 509 SVSDGNLHKLELIVTNKENCREQYKGHDRVVT 604
           S S   L ++ L + N   C   Y    R +T
Sbjct: 433 SPSPNYLQEVGLPLVNHSQCHATYLTASRKIT 464


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 8/144 (5%)
 Frame = +2

Query: 173 FQQCAGIVLTNYHYLSTATCFH-----GEFYDPAYRRIIAGSSRRSEPGEISY---VHFA 328
           F  C G ++++   ++ A   H     G   +P    ++ G+ ++     +     +   
Sbjct: 452 FHTCGGSLISDRWVVTAAQGIHRNKNPGGRQNPGGYTVVVGAHKKRGSTSVQQSLRLSQI 511

Query: 329 VNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGG 508
           + HP++++     D++++ +   + F                       + GWG      
Sbjct: 512 IEHPKYNDRRIVNDIALLELATPVQFDSAGKVGTVCLTDQRPAPGKRCYITGWGAINGDT 571

Query: 509 SVSDGNLHKLELIVTNKENCREQY 580
             S   L +  L + + ENCR +Y
Sbjct: 572 QQSPDILQQAMLPIASHENCRRKY 595



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +2

Query: 173 FQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA--VNHPEF 346
           F  C G ++++   ++ A C H       Y  ++    +R        +  +  + HP++
Sbjct: 129 FHTCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKY 188

Query: 347 SEENYDKDVSIVRVTHAIHF 406
           ++     D++++ +   + F
Sbjct: 189 NDRRIVNDIALLELATPVQF 208


>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 898

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 2/132 (1%)
 Frame = +2

Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSE-PGEISY-VHFAVNHPEFSEE 355
           C G ++     ++ A C         Y  ++    R    P + ++ +     H +FS  
Sbjct: 57  CGGSLIAKDWVVTAAHCVDRNPTPSGYTVVVGAHHRTGNTPVQNTFRLKQLFKHEQFSMR 116

Query: 356 NYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLHK 535
           +   D++++++   +                         + GWG TV GGS + G L +
Sbjct: 117 HLKNDIALLQLHEPVKASDKVNTVCLPSSGSRAQAGARCYITGWGRTVGGGSAA-GILQQ 175

Query: 536 LELIVTNKENCR 571
             L V    +C+
Sbjct: 176 AMLPVAGDSDCQ 187


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +2

Query: 143  EVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSS---RRSEPGEIS 313
            +V L +     Q+C G ++     L+ A CF   F  P    +  G S   RR   G+  
Sbjct: 1253 QVALTLSGNPVQRCGGALIAADWVLTAAHCF-DRFSMPPEWTVQVGVSDMRRRDGKGQSL 1311

Query: 314  YVHFAVNHPEFSEENYDKDVSIVRVTHAIHF 406
             +     HP+++  +++ D++++++     F
Sbjct: 1312 SIKAIFVHPQYNSSSHEHDLAVLQLQQPAEF 1342


>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 128 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 250
           +LV +E + P  N+W ++    +LT   Y STA    G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -3

Query: 532 VEVAVRYTAALNGSSPSEQI-NKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVI 356
           +++ V Y AA+   S   Q  N+N L Y +   D    +   A +  M  SY+  +  + 
Sbjct: 303 MKIKVNYVAAVQDESTYSQFYNENNLKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMH 362

Query: 355 LLREFGMVNSK 323
           L +  G++N +
Sbjct: 363 LAKNRGLINGE 373


>SB_35220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = -3

Query: 589 MTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVW 410
           M +VLF A+F +   EF ++ +  + T + +GS  +  +N     Y D  +D  T+L   
Sbjct: 1   MAVVLF-ALFRL--LEFLMLVIFTKGTCSNSGSQQALHVNITCEKYLDVYVDGETMLTGV 57

Query: 409 AEVDGMCYSYDAHILVV 359
             V  +     +H++ V
Sbjct: 58  QGVHSILIDSSSHVMAV 74


>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 198 SPTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLLTIPNSL 350
           SP+T+  Q++P +  +   L T + S +LPV       + FT    IP  +
Sbjct: 143 SPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQSFRMTFTPPSMIPKPI 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,990,236
Number of Sequences: 59808
Number of extensions: 511418
Number of successful extensions: 1250
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)