Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d15r
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 77 2e-15
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 30 0.35
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 29 0.61
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 28 1.1
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 28 1.4
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.7
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 25 10.0
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 25 10.0
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 10.0
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 77.4 bits (182), Expect = 2e-15
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Frame = -3
Query: 673 LAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKLDCGVSM 497
LAG +D QK S +GY + ++ N F S Y +VS ++ G ++
Sbjct: 146 LAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEAGGNV 205
Query: 496 KWTAGS-ADTL-FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQ 323
W A S A+ + + +KYALD+D + KIN+ + L Y Q +RPGVT+ L +D Q
Sbjct: 206 TWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQ 265
Query: 322 NFNAGGHKVGVAL 284
HK G++L
Sbjct: 266 RLGQPAHKAGLSL 278
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 492 GRRVRPTHYSELERSTRWTKTRLCTPRSTTSP 397
G V+PT SE+++ T W K L P ST+SP
Sbjct: 45 GLLVKPTMLSEVQKPTLWEK--LTKPASTSSP 74
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 29.1 bits (62), Expect = 0.61
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Frame = -1
Query: 561 VKISAVQSTRRYLTSWTAASA*SGRRVRPTHYSELERSTRWTKTRLCTPRSTTSPSSVLV 382
V+ S+V ST YLT AS+ + +S +E T +PR+T +PS+
Sbjct: 222 VRTSSVSST--YLTQDREASS-KNCLSKALAFSSIEPPASSAST---SPRNTPTPSNNGT 275
Query: 381 T-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNQTY 250
+ N N + + + T + +A ++ +LPSNS+P K N ++
Sbjct: 276 SINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = -2
Query: 386 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLVDKYILLSQPNS 210
W T PR C + T+++ + PQ P T L K +D + L PNS
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNS 203
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 661 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 521
H Q A F+K++ LGY+ AL++ DN + + K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 545 FNLPEGI*QAGLRRQHEVDGGFGRHIIRSWSEVRAGPRRVS--ARQDQQQVPHRSWL 381
+N +G + QH VD I WS ++ RRV+ Q+QQ +P S L
Sbjct: 79 YNFMDGFNKRTDTLQHRVDDKKILKTIEKWSCIKEKLRRVANITEQEQQCIPAESSL 135
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 411 ILACRDASWSSAYFAPTPNNV--SAEPAVHFMLTPQSSLSD 527
+ C+D +S F P P+N+ A+ V ++ P S+ D
Sbjct: 521 LATCKDVVCASDAFFPFPDNIYRLAQSGVKYVAAPGGSVMD 561
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 38 IKSRVRLYFDANCLQTFRKS**NSLTAFLG-KQERNI 145
+K + LYF A+CL TF S T ++ K+ER+I
Sbjct: 66 LKYLLPLYFLASCLLTFWSSVVKGSTVYVATKKERHI 102
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 464 RSWSEVRAGPRRVSARQDQQQVPHR 390
R WSE+ G ++ +D+ +VP +
Sbjct: 534 RKWSEINDGLQQKKEEEDEDEVPSK 558
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,350
Number of Sequences: 5004
Number of extensions: 64258
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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