Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d15r
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182...    60   2e-09
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646...    52   3e-07
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531...    50   2e-06
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    49   4e-06
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967...    42   6e-04
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    38   0.006
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330...    30   1.9  
12_01_0767 - 6956758-6957138,6957491-6957581,6957796-6957861,695...    29   3.4  
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358...    29   3.4  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    29   3.4  
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261...    28   5.9  
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172...    28   7.8  
02_03_0100 + 15230199-15231002                                         28   7.8  

>05_06_0213 +
           26414613-26414695,26416907-26417077,26417983-26418219,
           26418543-26418572,26419248-26419282,26421680-26421747,
           26423067-26423126,26423310-26423399,26423487-26423695,
           26424083-26424383
          Length = 427

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
 Frame = -3

Query: 667 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVSDKLDCGVSMKW 491
           G    FDT    F+K N  L + + D      ++N G     S Y KVS     G  +  
Sbjct: 296 GTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVSKTSAVGAELAH 355

Query: 490 TAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNA 311
           +  S +     G ++ALD+  ++ A+ NN  +     Q + RP   +T+S  +D +  + 
Sbjct: 356 SFSSNENTLTFGTQHALDELTTVKARFNNFGMASALIQHEFRPKSLVTISTEVDTKAIDK 415

Query: 310 GGHKVGVALELEP 272
              KVG++L L+P
Sbjct: 416 SS-KVGLSLVLKP 427


>01_06_0491 -
           29763738-29764044,29764266-29764474,29764565-29764654,
           29764819-29764905,29765598-29765733,29766036-29766186,
           29766334-29766502
          Length = 382

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
 Frame = -3

Query: 667 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVSDKLD--CGVSM 497
           G     DT    F+K +  L   + D A    ++N G     S Y  V+ +     G  +
Sbjct: 249 GADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVNKESGTAAGAEL 308

Query: 496 KWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNF 317
             +  + +     G ++ALD   ++ A+ NN  ++    Q + RP   LTLSA +D +  
Sbjct: 309 THSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVDTKAI 368

Query: 316 NAGGHKVGVALELEP 272
           +    KVG++L L+P
Sbjct: 369 DKAS-KVGLSLVLKP 382


>03_02_0058 -
           5316112-5316418,5316497-5316705,5316773-5316859,
           5316945-5317055,5317536-5317643,5319082-5319149,
           5319269-5319320
          Length = 313

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
 Frame = -3

Query: 667 GVHTQFDTQKAKFSKNNFALGYQSGDF-ALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKW 491
           G    FDT   KF+K + A+G    D+ A     D G     S    + DK    V  + 
Sbjct: 180 GAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVKVSGVYHLDDKQKSSVVAEL 239

Query: 490 T--AGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNF 317
           T    + +    VG  Y +D + ++ A++NN   +    Q +++P   LT+S   D +  
Sbjct: 240 TRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQHEVKPKSVLTISGEFDTKAL 299

Query: 316 NAGGHKVGVALELEP 272
           +    K G+AL L P
Sbjct: 300 DR-PPKFGLALALRP 313


>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
 Frame = -3

Query: 667 GVHTQFDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGSIYQKVS--DKLDCGVS 500
           GV   FDT  + F+K N AL   + D   +LH N ++G     S Y  V        G  
Sbjct: 142 GVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIASYYHLVKHHSNTAVGAE 200

Query: 499 MKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQN 320
           +  +    ++    G++++LD   ++ A+ NN  +     Q + RP   +T+S  +D + 
Sbjct: 201 LSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQHEWRPKSLITISGEVDTKA 260

Query: 319 FNAGGHKVGVALELE 275
                 KVG++L L+
Sbjct: 261 IEK-STKVGLSLVLK 274


>01_01_1200 -
           9670109-9670165,9670569-9670664,9670886-9670969,
           9671050-9671118,9671892-9671993,9672807-9672872,
           9673791-9673841,9673953-9674048,9674141-9674279,
           9674343-9674424,9674528-9674723
          Length = 345

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 25/99 (25%), Positives = 42/99 (42%)
 Frame = -3

Query: 646 TQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADTL 467
           T +  +S+  F+  Y+  DF     + N   +GG+  Q V+  L  G    W      + 
Sbjct: 173 TNEPHYSQGMFSFDYKGKDFRSQFQLGNNAFYGGNYIQSVTKNLSLGTEAFWLGQQRKSG 232

Query: 466 FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTL 350
            G  A+Y   +  +   +I    L+ L Y QK+   V+L
Sbjct: 233 VGFVARYDTKKMVAT-GQIATTGLVSLSYVQKVSEKVSL 270



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = -3

Query: 544 SIYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLR 365
           S  QKVS+K+       +   + D     G  Y L Q   L  KI+   ++    +++L 
Sbjct: 259 SYVQKVSEKVSLASDFMYNHMAKDVTASFGYDYMLRQ-CRLRGKIDTNGVVSALLEERLT 317

Query: 364 PGVTLTLSAAID 329
           PGV   LSA +D
Sbjct: 318 PGVNFVLSAELD 329


>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
            2053164-2053250,2053476-2053684,2054115-2054340,
            2054473-2054510,2054657-2054714,2055363-2055662,
            2055832-2055903,2055988-2056112,2056240-2056312,
            2056417-2056521
          Length = 1218

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = -3

Query: 670  AGVHTQFDTQKAKFSKNNFALGYQSGDF-ALHTNVDNGKDFGGSIYQKVSDKLDCGVSMK 494
            AG    FD+  A  +K N  + Y   DF A     D G+    S     ++     V+ +
Sbjct: 854  AGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGETLKASYIHTFNETNGATVAAE 913

Query: 493  WT--AGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVT 353
             T    + +  F +G+ +A+D    L  + +N   +G+  Q + RP  T
Sbjct: 914  VTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVLCQHEWRPKST 962


>12_01_0418 -
           3304741-3304904,3305579-3305762,3307254-3307347,
           3308530-3308882,3309140-3309274,3309354-3309392,
           3309587-3309652,3309739-3309834,3310291-3310527,
           3310602-3310722,3310854-3310889,3313062-3313159,
           3313298-3313591,3313842-3313904,3314280-3314438,
           3314557-3314655
          Length = 745

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -3

Query: 484 GSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGG 305
           G+AD+ FG+G    L    S  + +++ S +GL   QKL+P V +  ++  +   F A G
Sbjct: 645 GNADSTFGMG----LTSGQSQFSALDSSSRLGLKPWQKLKPSVEILCNSQANHYAFLALG 700

Query: 304 HKVGV 290
               V
Sbjct: 701 SYTSV 705


>12_01_0767 -
           6956758-6957138,6957491-6957581,6957796-6957861,
           6958079-6958194
          Length = 217

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 530 GI*QAGLRRQHEVDG-GFGRHIIRSWSEVRAGPRR 429
           G+ QAG RR+  V G GFG      W E R G  R
Sbjct: 167 GLAQAGHRREAVVVGDGFGTEAAPHWGEARGGRER 201


>06_03_0749 +
           24133302-24134274,24134585-24135272,24135751-24135857,
           24137565-24137815
          Length = 672

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 495 SGRRVRPTHYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA 358
           S  + + TH++   RS+ ++ +RLC P  TT+P     T+ +  +A
Sbjct: 349 SSAKAQGTHHASSVRSS-FSNSRLCLPSRTTNPPPKNATSNSKTEA 393


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 538 YQKVSDKLDCGVSMKWTAGSADTLFGVG 455
           +QKV D+LDCG+ +  T G    +  +G
Sbjct: 469 WQKVCDRLDCGLEINNTVGGMRKILSLG 496


>08_02_1596 +
           28125331-28125556,28125986-28126047,28126160-28126199,
           28126934-28127029,28127138-28127169,28127274-28127349,
           28127430-28127483,28127916-28127941
          Length = 203

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 269 ENITKPTLVDKYILLSQPNSVYRESISIVEI 177
           E + + T+VDK I LS PNSV   +  + E+
Sbjct: 141 EGVAEATIVDKQIPLSGPNSVVGRAFVVHEL 171


>11_01_0221 -
           1720952-1721164,1721351-1721428,1721836-1721895,
           1721996-1722099,1722214-1722372,1722668-1722794,
           1723469-1723636,1723789-1723899,1723989-1724142,
           1724308-1724643,1724753-1724937,1725040-1725138,
           1725275-1725538,1725674-1725850,1726249-1726542,
           1726649-1726816,1727473-1727817,1727901-1728070,
           1728171-1728321,1729193-1729262,1729353-1729537,
           1729896-1729989,1730094-1730212,1730558-1730617,
           1730744-1730830,1732348-1732434,1732622-1732730,
           1732822-1732900,1733067-1733154,1733328-1733392,
           1734287-1734439,1735231-1735337,1735419-1735501,
           1735643-1735733,1735812-1735948,1736118-1736207,
           1736301-1736468,1736875-1737057
          Length = 1805

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 351 LHCLLPSMDRTSMQVA 304
           LHCLLPS++R S Q A
Sbjct: 722 LHCLLPSINRNSSQAA 737


>02_03_0100 + 15230199-15231002
          Length = 267

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 521 QAGLRRQHEVDGGF-GRHIIRSWSEVRAGPRRVSARQDQQQVPHRSWLPTETTP 363
           QA L   ++  GG   RH+  S   V A   RVS+R+ ++ + H    PT  TP
Sbjct: 172 QARLHDGNQDGGGAPSRHVPSSGRRVEAQLSRVSSRRQRRTMKHSIPEPTIETP 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,381,037
Number of Sequences: 37544
Number of extensions: 438441
Number of successful extensions: 1158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)