Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d15r
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                    139   2e-33
SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)                 93   2e-19
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           32   0.49 
SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_14840| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_8824| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)                       28   7.9  
SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4)                 28   7.9  

>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score =  139 bits (336), Expect = 2e-33
 Identities = 60/132 (45%), Positives = 89/132 (67%)
 Frame = -3

Query: 670 AGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKW 491
           AG    +DT K+K   NNF+LGY++ DF +H+ V++   F GSIY ++S  L+    + W
Sbjct: 247 AGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAVNDASKFTGSIYHQISKNLEVAAQLNW 306

Query: 490 TAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNA 311
             GS++T F  G KY +D+D +L AK+NN S +GL Y Q+LR G+  T+S+ ID +N N 
Sbjct: 307 ATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGLAYTQRLRDGIKATVSSHIDTKNLNQ 366

Query: 310 GGHKVGVALELE 275
           GGHK+G++LE+E
Sbjct: 367 GGHKLGLSLEME 378


>SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)
          Length = 187

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 39/86 (45%), Positives = 59/86 (68%)
 Frame = -3

Query: 532 KVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVT 353
           ++S  L+    + W  GS++T F  G KY +D+D +L AK+NN S +GL Y Q+LR G+ 
Sbjct: 101 EISKNLEVAAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGLAYTQRLRDGIK 160

Query: 352 LTLSAAIDGQNFNAGGHKVGVALELE 275
            T+S+ ID +N N GGHK+G++LE+E
Sbjct: 161 ATVSSHIDTKNLNQGGHKLGLSLEME 186


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 324 CPSMAADNVRVTPGRSFCW*PRPMRDLLLILACRDASWSSAYFAPTPNNV--SAEPAVHF 497
           CP  A   VRV+P RS  W  R +    L+ AC   + S    +P P ++  S  P   +
Sbjct: 202 CPHHAVSGVRVSPPRSI-WCSRVLTTQYLVFACPHHAVSGVRVSP-PRSIWCSRVPTTQY 259

Query: 498 MLTP 509
           + +P
Sbjct: 260 LYSP 263



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 324 CPSMAADNVRVTPGRSFCW*PRPMRDLLLILACRDASWSSAYFAP 458
           CP  A  +VRV+P RS  W  R +    L+ AC   + S    +P
Sbjct: 171 CPHHAVSSVRVSPPRSI-WCSRVLTTQYLVFACPHHAVSGVRVSP 214


>SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -1

Query: 435 KTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNQ 256
           + R+CT R T +P+       +YA+     C+LP    T  QV  R   PS+     Y Q
Sbjct: 21  RQRVCTTRPTHTPTGAYYQTNSYAK----RCVLPD-HLTRQQV--RTTRPSHMPTGAYYQ 73

Query: 255 T--YSCR*IHTVVTTKQRV 205
           T  Y+ R + T   T QRV
Sbjct: 74  TILYANRCVLTEHLTCQRV 92


>SB_14840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 440 GPRRVSARQDQQQVPH---RSWLPTETTPRRNPYI 345
           G  R    Q Q Q+PH   +S +PT T P  NP++
Sbjct: 88  GRARYHGGQSQSQIPHGQRKSQIPTWTAPEPNPHV 122


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 302 QGWRCPRTRALENITKPTLVDKYILLSQPNSV 207
           QGW     + + NI  PT+VD Y +L + +S+
Sbjct: 154 QGWSADNIK-MRNIDDPTVVDDYSILGEADSI 184


>SB_8824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 431 RVSARQDQQQVPH---RSWLPTETTPRRNPYI 345
           R    Q Q Q+PH   +S +PT T P  NP++
Sbjct: 4   RYHGGQSQSQIPHGQRKSQIPTWTAPEPNPHV 35


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 592 DFALHTNVDNGKDFGGSIYQKV 527
           ++ +H ++  G+D+GGS YQ+V
Sbjct: 394 EYGIHLSLTVGRDYGGSYYQQV 415


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = -2

Query: 422  ARQDQQQVPHRSWLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLV 243
            ARQ++ +  +R WL       R   I    R+   Q      +  P     + IT P ++
Sbjct: 855  ARQEEVKEAYRKWLDDFMKSAREKEIAENSRYASTQAATSAPYASPPPSPYQQITSPQVM 914

Query: 242  DKYILLSQPNSVYRE 198
                 LS P+S Y +
Sbjct: 915  QS--TLSPPDSQYNQ 927


>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 335 HRWTELQCRWPQGWRCPRTRALENITKPTLVDK-YILLSQPNSVY 204
           H++ +++      W+C R ++L  +  P   +K Y    QPN+++
Sbjct: 170 HKYKDIEFETRNKWQCLRHQSLSLLKVPNYSNKHYCAFCQPNNIF 214


>SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)
          Length = 249

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 532 SGRLNRRNLYHCLRLCGEQSHQIGNLEQSCSWRTLLFVYQTGCVHQ 669
           S R+NRR + H +R C +   + G +   C+W     +  T  VH+
Sbjct: 157 STRMNRR-IRHLVRRCCKLGAKGGEMGFDCNWDRFTALQYTNIVHR 201


>SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4)
          Length = 305

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -2

Query: 458 WSEVRAG--PRRVSARQDQQQVPHRSWLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCP 285
           W E RA   PR      D+ ++       T+ T RR  + V C+  + L     +GWR P
Sbjct: 85  WRESRAPNHPRPDLNTLDESKLEGAWQSGTDLTERRKRHFVSCNTLSRLSLASRRGWRGP 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,501,314
Number of Sequences: 59808
Number of extensions: 514465
Number of successful extensions: 1398
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)