BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10d13r (649 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.0 SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 28 1.3 SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 1.8 SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 2.3 SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.1 SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 26 5.4 SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 7.1 SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1 SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 7.1 SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.1 SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 9.4 SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 9.4 SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 9.4 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 28.3 bits (60), Expect = 1.0 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 162 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPNSS 31 PP S+ S S +P + P +P L QP + V+ P S+ Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187 >SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces pombe|chr 2|||Manual Length = 811 Score = 27.9 bits (59), Expect = 1.3 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = -3 Query: 269 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 90 A E +A S L N+ + AAIT K + + F +E G V E+I Sbjct: 74 AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130 Query: 89 LTDYAAE-VSRVLE 51 + DY AE S++LE Sbjct: 131 VGDYVAENKSKILE 144 >SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 216 Score = 27.5 bits (58), Expect = 1.8 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = +3 Query: 225 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 338 EG LSND L+ S + P D + ENAD+SFS D Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195 >SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3|||Manual Length = 449 Score = 27.1 bits (57), Expect = 2.3 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -3 Query: 191 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 75 AITIGD + L + +++GP V +F + +P +LT ++ Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217 >SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 26.2 bits (55), Expect = 4.1 Identities = 11/40 (27%), Positives = 21/40 (52%) Frame = +3 Query: 198 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 317 + DN ++ SGS + D + + G+E+ +D EN + Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364 >SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 677 Score = 25.8 bits (54), Expect = 5.4 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 104 KIPVYLTDYAAEVSRVLEYVAQTRHQPDYCKLL 6 K+ +YLT+Y + +RV EY +T QP LL Sbjct: 261 KVILYLTNYMKDDNRVKEYFMKT--QPPLVTLL 291 >SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 846 Score = 25.4 bits (53), Expect = 7.1 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = +3 Query: 228 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 332 G GSG L ND L+ K S P +NA S G Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152 >SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1038 Score = 25.4 bits (53), Expect = 7.1 Identities = 22/56 (39%), Positives = 26/56 (46%) Frame = +3 Query: 216 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 383 VV E D +LS LK ++G +AEN S T NSG S D V SG Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869 >SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual Length = 478 Score = 25.4 bits (53), Expect = 7.1 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 Query: 516 ERISRSQQFTDFIEQV*DHDVKDA 587 E +SR QQF D + + ++KDA Sbjct: 63 EEVSRRQQFVDKLRTILSTEIKDA 86 >SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 249 Score = 25.4 bits (53), Expect = 7.1 Identities = 8/30 (26%), Positives = 18/30 (60%) Frame = +3 Query: 12 FTVIWLMTSLGDVLQNTADLGCVVRQVDRD 101 FT++WL +L + ++ C++++ D D Sbjct: 75 FTILWLTVRTVALLSHARNIQCLIQESDGD 104 >SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizosaccharomyces pombe|chr 3|||Manual Length = 388 Score = 25.0 bits (52), Expect = 9.4 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Frame = -3 Query: 332 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 168 S +GEI + V + + G L NVV EA A D +I SD+ AA + D+K Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377 >SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 500 Score = 25.0 bits (52), Expect = 9.4 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +1 Query: 142 PKRLIWRLDLTSPI 183 PK LIWR LT+P+ Sbjct: 436 PKELIWRSRLTNPV 449 >SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 783 Score = 25.0 bits (52), Expect = 9.4 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +3 Query: 195 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 320 SDV D +V+ E + +SN V + K S E D A++ F Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,324,353 Number of Sequences: 5004 Number of extensions: 42780 Number of successful extensions: 154 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 150 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 153 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 291768710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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