Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d13r
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.0  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    28   1.3  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   1.8  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    27   2.3  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   4.1  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   5.4  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   7.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   7.1  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.1  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   9.4  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.4  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   9.4  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 162 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPNSS 31
           PP  S+   S  S   +P + P +P  L    QP + V+ P S+
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 269 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 90
           A E  +A    S  L  N+    + AAIT    K  +  + F +E G  V    E+I   
Sbjct: 74  AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130

Query: 89  LTDYAAE-VSRVLE 51
           + DY AE  S++LE
Sbjct: 131 VGDYVAENKSKILE 144


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +3

Query: 225 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 338
           EG     LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 191 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 75
           AITIGD  + L  +   +++GP V +F  + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 198 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 317
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 104 KIPVYLTDYAAEVSRVLEYVAQTRHQPDYCKLL 6
           K+ +YLT+Y  + +RV EY  +T  QP    LL
Sbjct: 261 KVILYLTNYMKDDNRVKEYFMKT--QPPLVTLL 291


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 228 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 332
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +3

Query: 216 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 383
           VV E D   +LS   LK  ++G      +AEN     S T    NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 516 ERISRSQQFTDFIEQV*DHDVKDA 587
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 12  FTVIWLMTSLGDVLQNTADLGCVVRQVDRD 101
           FT++WL      +L +  ++ C++++ D D
Sbjct: 75  FTILWLTVRTVALLSHARNIQCLIQESDGD 104


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 332 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 168
           S +GEI   + V  +  + G  L NVV EA   A     D +I SD+  AA  + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 142 PKRLIWRLDLTSPI 183
           PK LIWR  LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 195 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 320
           SDV D +V+ E   +  +SN V + K  S  E   D A++  F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,353
Number of Sequences: 5004
Number of extensions: 42780
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)