Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d13r
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 30 1.2
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p... 29 2.0
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 29 2.7
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 2.7
At3g13410.1 68416.m01686 expressed protein 29 2.7
At4g01960.1 68417.m00261 expressed protein 28 4.7
At2g45680.1 68415.m05680 TCP family transcription factor, putati... 28 6.1
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 28 6.1
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 28 6.1
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 27 8.1
At1g36730.1 68414.m04569 eukaryotic translation initiation facto... 27 8.1
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 27 8.1
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 147 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 311
E +E DI N CS +D+ EG+ L N+ L+ +S+GS+ D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182
>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
protein (GI:507127) [Streptococcus pyogenes]
Length = 509
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 109 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 285
RK LTAG SRPK +R D++ +++ T + ++ EAV T + +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188
Query: 286 KDLRTRLKMRISPSAEPTDAETLGTARTKLS 378
L + S++ TD + + R+ LS
Sbjct: 189 DSLAKNTSANVDFSSQKTD-DPVTDVRSDLS 218
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/80 (30%), Positives = 32/80 (40%)
Frame = +3
Query: 183 SYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNS 362
S S V D + + D S + +SG Q E FSFS D C GNS
Sbjct: 353 SSTGSPVQDENKITIKDMHISAGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS 412
Query: 363 QD*VESGADVADTTQMQGAE 422
G+ +DT ++ G E
Sbjct: 413 ----SVGSSSSDTVKVDGKE 428
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 548 IGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 381
+GE + +D L R GS + G +F G V + K DF+S S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272
>At3g13410.1 68416.m01686 expressed protein
Length = 321
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 123 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 254
GWSNF E LE D+A + ++ +DV + + +L N
Sbjct: 70 GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113
>At4g01960.1 68417.m00261 expressed protein
Length = 236
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 138 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 299
+ EE DL+V + + ++T N V EGD S ++ N V G+ S GSE+ D
Sbjct: 6 SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60
>At2g45680.1 68415.m05680 TCP family transcription factor, putative
similar to PCF2 (GI:2580440) [Oryza sativa]
Length = 356
Score = 27.9 bits (59), Expect = 6.1
Identities = 25/110 (22%), Positives = 46/110 (41%)
Frame = +1
Query: 127 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRL 306
G S + + W L+ P +IAA + T+ A T + A ++L +
Sbjct: 107 GHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNADSDMGENLMKKK 166
Query: 307 KMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPE 456
+ R S ++E D +A + L+ + T T + + L SS + P+
Sbjct: 167 RKRPS-NSEYIDISDAVSASSGLAPIATTTTIQPPQALASSTVAQQLLPQ 215
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 117 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 254
+DG+ N A E+ + V + N+Y + V N+V+ G+LS+
Sbjct: 44 LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 189 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 308
CSS ++ VV EG+G ++ ++ + KS+ E D+ E
Sbjct: 990 CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +3
Query: 165 RFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 323
R I+N+ ++ T+N+ C G S L ++++ +G+ Q +++ FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527
>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
5, putative / eIF-5, putative similar to SP|P55876
Eukaryotic translation initiation factor 5 (eIF-5) {Zea
mays}; contains Pfam profiles PF02020:
eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
IF2B/IF5
Length = 439
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 138 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 317
AS E EV I Y D+ D DV+ E G S+ VLK + E Q+A ++
Sbjct: 379 ASAEAAKEVALVIKGLY-DEDILDEDVIVEWYNKGVKSSPVLKNVTPFIEWLQNAESESE 437
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 452 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 360
GRV DV A D S VS+ GTR++ +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,407
Number of Sequences: 28952
Number of extensions: 243616
Number of successful extensions: 747
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -