Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d13f
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0204 + 1539859-1540158 30 1.2
04_04_1110 + 30973202-30973870 30 1.2
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.2
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 2.8
12_01_0506 + 4017568-4017716,4018171-4018474 29 3.7
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 29 3.7
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 29 3.7
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 4.9
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 28 6.5
01_06_0034 + 25769436-25769701,25769749-25769887 28 6.5
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 8.6
12_01_0574 - 4697425-4698312 27 8.6
12_01_0149 - 1150949-1151041,1151145-1151190,1151343-1151460,115... 27 8.6
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 27 8.6
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 202 YAGSWSPPGASDIINFSGRVTDVKADD 282
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 542 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 369
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -1
Query: 576 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 424
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 86 CGTADTQARARAKMKAFIVDWIL 18
C DTQ +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 594 EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLK-GKSSGS 421
++ DG ++ ++ E D+E++ D Y + DV + V E GSG V + G++SGS
Sbjct: 89 DLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGSGCKGKAVEEHGEASGS 145
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 561 EEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PQDAAENADF 385
EE D E+ D+ + CSSD + + D S NDV SG + +D ++ ++
Sbjct: 419 EEYD-EIFDDLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEY 477
Query: 384 SFSGTD 367
S G++
Sbjct: 478 SSGGSE 483
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +1
Query: 256 RVTDVKADDFSSLH-LRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSFASGG 432
++ + LH L + ++ ++ ++P + ++ + +L SF +G
Sbjct: 107 QIASIVCSGIQPLHNLTVLRFIEKKVGTGESIPWTQQQIDRGFADLLLCHTMLTSFPNG- 165
Query: 433 LALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINL 558
+A EN+V + D + ++D+ A I + QIN+
Sbjct: 166 VAAENLVKGCAGKYATGDEVRLADVFLAPQIYAAVTRFQINM 207
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 88 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 183
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 27.9 bits (59), Expect = 6.5
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 232 SDIINFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVL 411
S++++FS + F S L + G+ V P VSASV S G F +
Sbjct: 452 SEMMSFSTPLLQKLERCFPSNMLVDLPREGSSRTCVFHFPAVSASVVSLTGAGDCFVGGV 511
Query: 412 RSFASGGLALENVVAE--ATASVSLADNIIVSDIGAAITIGDVKSNLQIN 555
S GGL + VA A A S+ + D +A TI + + I+
Sbjct: 512 ISALCGGLGMMQSVAVGIAIAKSSVESEANIPDKFSAATIAGITPCISIS 561
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 507 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 397
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -1
Query: 507 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 415
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>12_01_0574 - 4697425-4698312
Length = 295
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +1
Query: 346 VPRVSASVGSAEGE------IRIFSRVLRSFASGGLALENVVAEATASVSLA 483
V + VG+AEGE +R+ +R R + S GLA+ +V A A+ +LA
Sbjct: 220 VAAAAGDVGAAEGELREAQRLRVAARRRRLWLSAGLAVLLLVVLAAAAAALA 271
>12_01_0149 -
1150949-1151041,1151145-1151190,1151343-1151460,
1151541-1151637,1151711-1151908,1152024-1152086,
1152384-1152443,1152558-1152660,1154398-1154507
Length = 295
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -1
Query: 582 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSE 418
GWSN D D+A + S + +D+ E +L D+LK + SE
Sbjct: 66 GWSNLVCSREDHAKSVDVAVLFLGSKLQSSDISKEKQADSTLV-DMLKNSFASSE 119
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 492 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 400
+V C G G G+++ D +G SG R DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,379
Number of Sequences: 37544
Number of extensions: 297321
Number of successful extensions: 1034
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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