Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d12r
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0506 + 4017568-4017716,4018171-4018474 30 1.5
12_01_0204 + 1539859-1540158 30 1.5
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 30 1.5
04_04_1110 + 30973202-30973870 30 1.5
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.5
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 3.5
03_04_0211 + 18661949-18662470 29 4.6
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 29 4.6
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 29 4.6
12_02_0820 + 23437811-23440230,23440336-23440534 28 6.1
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543... 28 6.1
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 6.1
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 28 8.1
01_06_0034 + 25769436-25769701,25769749-25769887 28 8.1
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 63 TADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGS 242
T +L V+ + ++ DG ++ ++ E D+E++ D Y + DV + V E GS
Sbjct: 72 TGELDVAYIYVEEPEIVDLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGS 129
Query: 243 GSLSNDVLK-GKSSGS 287
G V + G++SGS
Sbjct: 130 GCKGKAVEEHGEASGS 145
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 506 YAGSWSPPGASDIINFSGRVTDVKADD 426
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = -3
Query: 350 SASVGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSD--IGAAITIGD 177
S S E +R +R+L + +A + V + S N +S+ IGA I +G
Sbjct: 1440 SGSTFVVEPAVRALNRLLDEEYNAEIAATSEVVDLLVSFVPGTNHQLSEACIGALIKLGK 1499
Query: 176 VKSNLQINLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVL 57
+ N ++ + + V + + +PV ++ AE+ R+L
Sbjct: 1500 DRPNCKLEMVKAGIIEHVLDMILDVPVSVSSSIAELLRIL 1539
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 166 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 339
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +3
Query: 132 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 284
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 622 CGTADTQARARAKMKAFIVDWIL 690
C DTQ +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232
>03_04_0211 + 18661949-18662470
Length = 173
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -2
Query: 165 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVTSPNSSSTDYCKLL 10
PP S R+RS +S +Q+P+ L LR +PC+G SP+S +LL
Sbjct: 105 PP--SSRSRSSSSLRQVPQPRHRLRPRLRV-AKPCAGRVSPSSKDRRRSRLL 153
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 147 EEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PQDAAENADF 323
EE D E+ D+ + CSSD + + D S NDV SG + +D ++ ++
Sbjct: 419 EEYD-EIFDDLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEY 477
Query: 324 SFSGTD 341
S G++
Sbjct: 478 SSGGSE 483
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -3
Query: 452 RVTDVKADDFSSLH-LRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSFASGG 276
++ + LH L + ++ ++ ++P + ++ + +L SF +G
Sbjct: 107 QIASIVCSGIQPLHNLTVLRFIEKKVGTGESIPWTQQQIDRGFADLLLCHTMLTSFPNG- 165
Query: 275 LALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINL 150
+A EN+V + D + ++D+ A I + QIN+
Sbjct: 166 VAAENLVKGCAGKYATGDEVRLADVFLAPQIYAAVTRFQINM 207
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 12 VIYSNLLMTSWATLLQNTADLGC-VVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANS 188
V S+ AT +Q+ ++ VR + + + ++ WS+ EEI DI +
Sbjct: 244 VAISSTYYDKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEI------DILDE 297
Query: 189 YCSSDVTDNDVVC 227
Y S D+DV C
Sbjct: 298 YSSEFTADSDVPC 310
>06_01_0735 +
5431900-5432044,5432137-5432271,5432710-5432750,
5433463-5433579,5433779-5433898,5433982-5434076,
5434149-5434242,5434592-5434723,5435191-5435303,
5435443-5435566,5435884-5436000,5436083-5436177,
5436269-5436362,5436655-5436780,5436854-5436966,
5437067-5437256,5437395-5437508,5437551-5437598
Length = 670
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 5 RSSNLQ*SVDDELGDVTPEHG*PRLRSPSGRQGSSLG 115
R +NL +VD +GD+ EHG P++ P+ +S G
Sbjct: 453 RGNNL--AVDLTVGDIYGEHGYPKIGLPASTTAASFG 487
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 620 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 525
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 27.9 bits (59), Expect = 8.1
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = -3
Query: 476 SDIINFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVL 297
S++++FS + F S L + G+ V P VSASV S G F +
Sbjct: 452 SEMMSFSTPLLQKLERCFPSNMLVDLPREGSSRTCVFHFPAVSASVVSLTGAGDCFVGGV 511
Query: 296 RSFASGGLALENVVAE--ATASVSLADNIIVSDIGAAITIGDVKSNLQIN 153
S GGL + VA A A S+ + D +A TI + + I+
Sbjct: 512 ISALCGGLGMMQSVAVGIAIAKSSVESEANIPDKFSAATIAGITPCISIS 561
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 201 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 311
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,367,841
Number of Sequences: 37544
Number of extensions: 355805
Number of successful extensions: 1258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -