Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d12r
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    26   0.39 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   0.90 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   8.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   8.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   8.4  

>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 686 IQSTMKAFIFALALACVSAV 627
           + +T +AFI++LAL C+ A+
Sbjct: 2   VSNTKQAFIYSLALLCLHAI 21


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 680 STMKAFIFALALACVSAV 627
           +T +AFI++LAL C+ A+
Sbjct: 4   NTKQAFIYSLALLCLHAI 21


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 93  PDGLRSRGQPCSGVTSPNSSSTDYCKLL 10
           PD   ++ + CSG+TS      D C  L
Sbjct: 106 PDWTWAKNENCSGITSAYKIEIDMCDRL 133


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 21  SNLLMTSWATLLQNTADLGCVVRQVDRDL 107
           +N+ +  W  LLQ   DL C +R+++  L
Sbjct: 63  TNIGINKWRFLLQCLEDLDCSLRKLNSRL 91


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 238 EAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETL 357
           E V +  T   A+P +A+++  +L+   S +   T AET+
Sbjct: 164 EPVWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETV 203


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 244 VASATTFSRASPPEAKDLRTRLKMRISP 327
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 228 EGDGSGSLSNDVLKGKSSGSERP 296
           EG G  SL   + +G+ +G+E P
Sbjct: 731 EGSGGDSLRTLLQRGQETGAEWP 753


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 93  PDGLRSRGQPCSGVTSPNSSSTDYCKLL 10
           PD   ++   CSG+ S +  + D C  L
Sbjct: 108 PDWSFAKYDDCSGIVSASKLAIDKCDRL 135


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 198 SCNNYW 181
           SCNNYW
Sbjct: 100 SCNNYW 105


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 93  PDGLRSRGQPCSGVTSPNSSSTDYCKLL 10
           PD   ++   CSG+ S +  + D C  L
Sbjct: 108 PDWSFAKYDDCSGIVSASKLAIDKCDRL 135


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 93  PDGLRSRGQPCSGVTSPNSSSTDYCKLL 10
           PD   ++   CSG+ S +  + D C  L
Sbjct: 108 PDWSFAKYDDCSGIVSASKLAIDKCDRL 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,470
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)