Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d12r
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    30   1.3  
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    29   2.2  
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    29   2.9  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    29   2.9  
At3g13410.1 68416.m01686 expressed protein                             29   2.9  
At4g01960.1 68417.m00261 expressed protein                             28   5.1  
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ...    28   6.8  
At2g45680.1 68415.m05680 TCP family transcription factor, putati...    28   6.8  
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta...    28   6.8  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    28   6.8  
At5g15130.1 68418.m01773 WRKY family transcription factor contai...    27   8.9  
At1g36730.1 68414.m04569 eukaryotic translation initiation facto...    27   8.9  
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l...    27   8.9  

>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 150 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 314
           E  +E   DI N    CS   +D+    EG+    L N+ L+ +S+GS+   D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +1

Query: 112 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 288
           RK LTAG   SRPK   +R D++  +++      T  +  ++ EAV    T +      +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188

Query: 289 KDLRTRLKMRISPSAEPTDAETLGTARTKLS 381
             L       +  S++ TD + +   R+ LS
Sbjct: 189 DSLAKNTSANVDFSSQKTD-DPVTDVRSDLS 218


>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/80 (30%), Positives = 32/80 (40%)
 Frame = +3

Query: 186 SYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNS 365
           S   S V D + +   D   S  +      +SG    Q   E   FSFS  D C   GNS
Sbjct: 353 SSTGSPVQDENKITIKDMHISAGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS 412

Query: 366 QD*VESGADVADTTQMQGAE 425
                 G+  +DT ++ G E
Sbjct: 413 ----SVGSSSSDTVKVDGKE 428


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 551 IGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 384
           +GE +  +D L R    GS +  G     +F G V + K  DF+S      S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272


>At3g13410.1 68416.m01686 expressed protein
          Length = 321

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 126 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 257
           GWSNF   E  LE   D+A  +   ++  +DV  + +   +L N
Sbjct: 70  GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113


>At4g01960.1 68417.m00261 expressed protein
          Length = 236

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 141 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 302
           + EE DL+V  +      + ++T N V  EGD S ++ N V  G+ S  GSE+  D
Sbjct: 6   SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60


>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 451

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 96  LPDGLRSRGQPCSGVTSPNSSSTDYCKLLE 7
           LP+  + R   CS +TS N+SST Y   L+
Sbjct: 382 LPERTKGRYAACSSLTSLNASSTRYLPSLQ 411


>At2g45680.1 68415.m05680 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) [Oryza sativa]
          Length = 356

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/110 (22%), Positives = 46/110 (41%)
 Frame = +1

Query: 130 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRL 309
           G  S  + + W L+   P +IAA  + T+   A          T + A     ++L  + 
Sbjct: 107 GHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNADSDMGENLMKKK 166

Query: 310 KMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPE 459
           + R S ++E  D     +A + L+ + T  T +  + L SS +     P+
Sbjct: 167 RKRPS-NSEYIDISDAVSASSGLAPIATTTTIQPPQALASSTVAQQLLPQ 215


>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 120 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 257
           +DG+ N A E+ +  V   + N+Y  + V  N+V+      G+LS+
Sbjct: 44  LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 192  CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 311
            CSS  ++  VV EG+G   ++ ++ + KS+  E   D+ E
Sbjct: 990  CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029


>At5g15130.1 68418.m01773 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain; TMV
           response-related gene product, Nicotiana tabacum,
           EMBL:AB024510
          Length = 548

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 168 RFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 326
           R  I+N+   ++ T+N+  C G  S  L ++++    +G+   Q +++   FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527


>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
           5, putative / eIF-5, putative similar to SP|P55876
           Eukaryotic translation initiation factor 5 (eIF-5) {Zea
           mays}; contains Pfam profiles PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
           IF2B/IF5
          Length = 439

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 141 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 320
           AS E   EV   I   Y   D+ D DV+ E    G  S+ VLK  +   E  Q+A   ++
Sbjct: 379 ASAEAAKEVALVIKGLY-DEDILDEDVIVEWYNKGVKSSPVLKNVTPFIEWLQNAESESE 437


>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
           similarity to dienelactone hydrolase [Rhodococcus
           opacus] GI:23094407; contains Pfam profile PF01738:
           Dienelactone hydrolase family
          Length = 310

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 455 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 363
           GRV DV A D S      VS+ GTR++  +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,396,058
Number of Sequences: 28952
Number of extensions: 262207
Number of successful extensions: 834
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)