Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d11r
         (567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    27   0.15 
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    27   0.15 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  

>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 497 VLTAIVAVSTNEVADPRSTDRANALSIGSITSSDRLLRSFV 375
           VL   VAV +   A  + T + + + +  I  SDRLL+++V
Sbjct: 5   VLVLFVAVLSVVFAADKYTTKYDNIDLNQILKSDRLLKNYV 45


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 497 VLTAIVAVSTNEVADPRSTDRANALSIGSITSSDRLLRSFV 375
           VL   VAV +   A  + T + + + +  I  SDRLL+++V
Sbjct: 5   VLVLFVAVVSVVFAADKYTTKYDNIDLNQILKSDRLLKNYV 45


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 120  FLFFRLHKKFVLPIFLINNSRIYFEASLVF 31
            F FF ++  FVL +FL+   + Y      F
Sbjct: 1270 FAFFMMNALFVLIVFLLTLKKDYLHIKWPF 1299


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 120  FLFFRLHKKFVLPIFLINNSRIYFEASLVF 31
            F FF ++  FVL +FL+   + Y      F
Sbjct: 1270 FAFFMMNALFVLIVFLLTLKKDYLHIKWPF 1299


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 244  PPPVRRTLANCVDPRT 291
            PPP   T  + VDP++
Sbjct: 1806 PPPQHSTTQSLVDPKS 1821


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 120  FLFFRLHKKFVLPIFLI 70
            F FF  +  FVL +FL+
Sbjct: 1270 FAFFMFNALFVLVVFLL 1286


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 120  FLFFRLHKKFVLPIFLI 70
            F FF  +  FVL +FL+
Sbjct: 1270 FAFFMFNALFVLVVFLL 1286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,830
Number of Sequences: 336
Number of extensions: 2252
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)