Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d10r
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.49 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    28   1.5  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    28   1.5  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   2.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    26   6.0  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   8.0  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 416  TLSDTINTIALPSGQELQEN-FVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVC 240
            TL +   T+A  S   LQ+N  +      + FGL+SS+  +     L HV+  + N+   
Sbjct: 933  TLVNKKETLAQDSESLLQKNNALNEKGFENQFGLSSSAAKVLNKDTLDHVSGPISNSVSS 992

Query: 239  TF 234
            +F
Sbjct: 993  SF 994


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 177 RHLPW*LRWPSCCYKKQPSYLDWYYIIWLWSRL 79
           RHL   + W SC YK    Y  W++ +  +SR+
Sbjct: 309 RHLSD-VEWKSCFYKSYYEYRSWFHNVTNFSRI 340


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 27  EIHERCNSGICGRQVHLATETRAK*CNTNQDRTVV 131
           E+HER  S I   ++ +  +   K CNTN+   ++
Sbjct: 219 ELHERLRSSISRERIGVEVDKMLKHCNTNRALKII 253


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -3

Query: 479 PNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSGS 300
           P  S ++I  +     LPSPV+   T  T + P G   Q    GSS VA  + +   + +
Sbjct: 228 PQVSSSSITTNATYQNLPSPVS---TSTTSSQPYGAFHQPATTGSSFVADKWKMPMFTSN 284

Query: 299 ITTNQ 285
           +T+ Q
Sbjct: 285 VTSAQ 289


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
 Frame = -3

Query: 500  TSSIVMHPNW--SPATIRNDVAVIYLPSPVTLSDTI-NTIALPSGQELQENFVGSSAVAS 330
            TSS V++ +   S +T+     VI   S ++ + +I ++++L S          SSA ++
Sbjct: 3469 TSSSVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFST 3528

Query: 329  G---FGLTSSSGSITTNQVLS 276
            G   F LTS +GS++++ ++S
Sbjct: 3529 GSSSFSLTSENGSVSSSSLVS 3549


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 477  RMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVSGNKRSSA 635
            R H  R+ LNS       HG+++ + A  +   I P ++  +    GN+ S+A
Sbjct: 2607 RNHSTRSSLNSPRQFWAYHGSRSKKIADIVKRHIPPTINGKRSKNKGNEGSNA 2659


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 236 FAFPFVLQSSNLCTSGRG 183
           F +PFVL+S  L   GRG
Sbjct: 137 FGYPFVLKSKTLAYDGRG 154


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -3

Query: 401 INTIALPSGQELQENFVGSSAVASGFGLTSSS-----GSITTNQVLSHVNLDVI 255
           INT ALP   +    F G + +A GFG+ +S      GS++   V+    +D+I
Sbjct: 192 INT-ALPQLCQRVRKFAGDTPLAVGFGVNTSEHFHQVGSVSDGVVVGSKIIDLI 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,249
Number of Sequences: 5004
Number of extensions: 64492
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)