Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d10r
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1129 - 30595580-30595771,30596119-30597162 31 0.89
11_06_0138 + 20522197-20522670 31 1.2
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 30 2.1
02_05_0239 + 27101440-27101904 29 4.8
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 6.3
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 28 6.3
12_01_0337 - 2591689-2593839 28 8.3
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600 28 8.3
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178 28 8.3
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 28 8.3
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 31.1 bits (67), Expect = 0.89
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = +1
Query: 442 ATSLRMVAGDQFGCITIELVSTLVPPLKSVTEPRTTVTLVP 564
A SLR V G G I +EL S PP S E R VTL P
Sbjct: 179 AWSLRDVRGSPTGSIEVELASA-APPEASGVEARCVVTLHP 218
>11_06_0138 + 20522197-20522670
Length = 157
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 76 WQPRPEPNDVIPIKIGRLFLVTTRGPPESPRQVPTPP 186
W P P P DV+P+ + F+ P PR+ PTPP
Sbjct: 81 WLPSPPPGDVVPM-LDSYFVAARWLAP--PRRPPTPP 114
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 76 WQPRPEPNDVIPIKIGRLFLVTTRGPPESPRQVPTPP 186
W P P P DVI + G F+ R P P +P+PP
Sbjct: 53 WPPTPPPGDVI-LAQGSYFVTAWR--PIPPCWLPSPP 86
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 203 LCTSGRGGVGTCRGDSGGPLVVTRNNRPILIGITSFGSGLGCQVNLPAAYAR 48
LC++ GT S PLV++ + ++ G+T+ GS + AA+AR
Sbjct: 77 LCSAAAAASGTAAASSNLPLVLSIHAHALVSGLTADGSVASHLLTAYAAFAR 128
>02_05_0239 + 27101440-27101904
Length = 154
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 103 VIPIKIGRLFLVTTRGPPESPRQVPTPP 186
V+ + + LF RGPP P PTPP
Sbjct: 23 VLGVWLCYLFQAVARGPPPDPPPPPTPP 50
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 531 HGTKNDRYARALVGAIEPAVSSCQ*SVSGN--KRSSADARAWLSI 659
H T DR ++ + PA+ + Q VS +R+ AD+R W S+
Sbjct: 647 HDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADSRFWWSL 691
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 45 NSGICGRQVHLATETRAK*CNTNQD 119
NS CGRQ+H+AT + +TN D
Sbjct: 176 NSHFCGRQLHVATFIKKSERSTNND 200
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = -1
Query: 571 PTKARA*RSFLVP*HSSAVAPELRPVRL*CIRIGLLLPFVMMWPSFTYPVPLLCLIQSIR 392
P A A + LVP + PV + I +GLLLP V + SF V L L+ +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLLLSFPTTVSLHYLLNLLL 158
Query: 391 SL 386
L
Sbjct: 159 RL 160
>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
Length = 251
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 449 DVAVIYLPSPVTLSDTINTIALP 381
+++ + LP P+T S +TIALP
Sbjct: 227 EISTVMLPCPITTSSLCSTIALP 249
>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
Length = 518
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 389 ALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLD 261
A+P G +Q+ + A+ASG S+SG+ TT S V +D
Sbjct: 475 AIPLGLAVQQGDIIQGALASGVIQESNSGAGTTQPCHSEVFID 517
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 151 PPESPRQVPTPPRPLVHKFEDCKTKGKANVQTKLFITSRF 270
PP SP P+PP P K +T GKA K I+ F
Sbjct: 57 PPRSPSPSPSPPPPPPTK-PSRRTLGKARAPKKRSISDLF 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,518
Number of Sequences: 37544
Number of extensions: 496347
Number of successful extensions: 2046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2037
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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