Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d10r
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20060.1 68414.m02511 kinesin motor protein-related                 33   0.18 
At2g46180.1 68415.m05742 intracellular protein transport protein...    30   1.3  
At2g28220.1 68415.m03426 aspartyl protease family protein contai...    30   1.3  
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH...    29   4.0  
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ...    29   4.0  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    28   5.2  
At3g03920.1 68416.m00407 Gar1 RNA-binding region family protein ...    28   5.2  
At1g20160.1 68414.m02521 subtilase family protein similar to sub...    28   5.2  
At4g33590.1 68417.m04772 hypothetical protein                          28   6.9  
At3g49640.1 68416.m05425 nitrogen regulation family protein simi...    28   6.9  
At2g28390.1 68415.m03450 SAND family protein similar to Sand (GI...    28   6.9  
At1g23790.1 68414.m03001 expressed protein                             28   6.9  
At5g38970.3 68418.m04714 cytochrome P450, putative similar to Cy...    27   9.2  
At5g38970.1 68418.m04713 cytochrome P450, putative similar to Cy...    27   9.2  
At3g23685.1 68416.m02978 F-box family protein contains TIGR01640...    27   9.2  
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f...    27   9.2  
At1g20150.1 68414.m02520 subtilase family protein similar to sub...    27   9.2  

>At1g20060.1 68414.m02511 kinesin motor protein-related
          Length = 951

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +1

Query: 91  EPNDVIPIKIGRLFLVTTRGPPESPRQVPTPPRPLVHKFEDCKTKGKANVQTKLFITSRF 270
           E N  IP  I  +    T    +  +  PTP    V   +DC   G +NVQTK  I+ RF
Sbjct: 753 EENVGIPSTITHVEAEVTDFQRDQNQDDPTPSPEQVEVSQDCINSGLSNVQTKSAISRRF 812


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 384 KSDRIDCIRQSNGTG*VNDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKND 548
           K  R+D  R SN      +G    N S+R      NR  +N+G  A + +GT+ND
Sbjct: 124 KESRLDLSRASNNNAIKGNGDHSPNRSQRSPTNWKNRNQMNNG-IASKPNGTEND 177


>At2g28220.1 68415.m03426 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 756

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 380 SGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVI---NNFVCTFAFPFVLQS 210
           SGQ   +   G++A+ +G G  ++   I  +    ++NLD +   +N + T   PF  + 
Sbjct: 567 SGQGTSKINFGTNAIVAGDGTVAADMFIKKDNPFYYLNLDAVSVEDNLIATLGTPFHAED 626

Query: 209 SNL 201
            N+
Sbjct: 627 GNI 629



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 380 SGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVI---NNFVCTFAFPFVLQS 210
           SGQ   +   G++A+ +G G  ++   I  +    ++NLD +   +N + T   PF  + 
Sbjct: 228 SGQGTSKINFGTNAIVAGDGTVAADMFIKKDNPFYYLNLDAVSVEDNRIETLGTPFHAED 287

Query: 209 SNL 201
            N+
Sbjct: 288 GNI 290


>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
           (CHX16) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 847

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -3

Query: 428 PSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINN 249
           PS + +   + +  LP   + +EN   SSAV   F  +S   S++   V +   L  I+ 
Sbjct: 554 PSSIRMVQKVRSNGLPFWNKKREN---SSAVTVAFEASSKLSSVSVRSVTAISPLSTIHE 610

Query: 248 FVCTFA 231
            +C+ A
Sbjct: 611 DICSSA 616


>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1933

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 225 LRLAIFKLMHKWTRWCRHLPW*--LRWPSCCYKKQPS--YLDWYYIIW 94
           +R  + K    +  WC++L     LR+P+ C K+Q S  Y+  Y +IW
Sbjct: 303 VRKLMEKYFKNYNSWCKYLRCDSYLRFPAGCDKQQLSLLYIGLYLLIW 350


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 82  PRPEPNDVIPIKIGRLFLVTTRGPPESPRQVPTPPRPLVH 201
           PRP P    P          T+ PP  P   P PP P+VH
Sbjct: 687 PRPPPPPPPP---PMQHSTVTKVPPPPPPAPPAPPTPIVH 723


>At3g03920.1 68416.m00407 Gar1 RNA-binding region family protein
           contains Pfam profile PF04410: Gar1 protein RNA binding
           region
          Length = 202

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 224 FVLQSSNLCTSGRGGVGTCRGDSGG 150
           F+ Q     T GRGG G  RGDS G
Sbjct: 143 FLPQPKGQSTGGRGGAGRGRGDSRG 167


>At1g20160.1 68414.m02521 subtilase family protein similar to
           subtilisin-type protease precursor GI:14150446 from
           [Glycine max]
          Length = 769

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
 Frame = -3

Query: 482 HPNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSG 303
           HP W P+ IR+ +         T + T N      G    E    ++   SG G  SS+ 
Sbjct: 563 HPTWGPSAIRSAIM-------TTATQTNN----DKGLITTETGATATPYDSGAGELSSTA 611

Query: 302 SITTNQVLSHVNLDVINNFVCTFAFPFVLQSSNLCTSGRGGVGTCRGDSGGPLVVTRNNR 123
           S+    V      D + NF+C + +   + +    +       TC  DS   L+ T N  
Sbjct: 612 SMQPGLVYETTETDYL-NFLCYYGYN--VTTIKAMSKAFPENFTCPADSNLDLISTINYP 668

Query: 122 PILIGITSF-GSG 87
              IGI+ F G+G
Sbjct: 669 S--IGISGFKGNG 679


>At4g33590.1 68417.m04772 hypothetical protein 
          Length = 466

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 414 FV*YNQYDRSSKWTGITRKLCWILGSRFWLWSDQQLWI 301
           FV YNQYD  + W G+T  + +I  S        Q W+
Sbjct: 164 FVSYNQYDYGNLWHGLTAVVPFIAWSLRNQCEKPQKWV 201


>At3g49640.1 68416.m05425 nitrogen regulation family protein similar
           to NITROGEN REGULATION PROTEIN NIFR3 (SP:Q08111)
           [Rhodobacter capsulatus]; contains Pfam domain PF01207:
           Dihydrouridine synthase (Dus)
          Length = 519

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 368 LQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVCTF 234
           +++N+V    +     L SSSG + T  ++  +   V   FV TF
Sbjct: 162 MKQNYVMQDKIVRSLSLKSSSGELETYSLMWSLRPGVFEFFVATF 206


>At2g28390.1 68415.m03450 SAND family protein similar to Sand
           (GI:3928166) [Takifugu rubripes]; contains Pfam PF03164:
           SAND family protein
          Length = 607

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 518 GGTRVETSSIVMHPNWSPATIRNDVAVIYLPSPVTLSDTINTI 390
           GGT    SS+V   +W+PAT  +  A   LP P  L     TI
Sbjct: 293 GGTDAVFSSLVHSFSWNPATFLH--AYTCLPLPYALRQATGTI 333


>At1g23790.1 68414.m03001 expressed protein 
          Length = 518

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 227 PFVLQSSNL----CTSGRGGVGTCRGDSGGPLVVTRNNRPILIGITSFGSGLGCQVNLPA 60
           PFVL+ + L    CT  +  +GT R  +  P V+TR   P  +  +  G  L      PA
Sbjct: 145 PFVLKPAPLDFDQCTPAKHRLGTGRFMAASPNVMTRGRSPGGVRCSYGGGLLSKMAESPA 204

Query: 59  AYAR 48
           A  R
Sbjct: 205 AMMR 208


>At5g38970.3 68418.m04714 cytochrome P450, putative similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 419

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 603 IDSCSLLVRWHQPRHERNG 547
           +  CS L+RW+Q R+ +NG
Sbjct: 15  VSLCSALLRWNQMRYTKNG 33


>At5g38970.1 68418.m04713 cytochrome P450, putative similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 465

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 603 IDSCSLLVRWHQPRHERNG 547
           +  CS L+RW+Q R+ +NG
Sbjct: 15  VSLCSALLRWNQMRYTKNG 33


>At3g23685.1 68416.m02978 F-box family protein contains TIGR01640:
           F-box protein interaction domain
          Length = 330

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 198 HKWTRWCRHLPW*LRWPSCCYKKQPSYLDWYY 103
           H W R+   L + +   SCCY K    +D+YY
Sbjct: 93  HGWDRFSYALGY-VNTDSCCYYKLLGLIDYYY 123


>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
           factor (HB-9) identical to HD-Zip protein GB:CAA71854
           GI:2145358 from [Arabidopsis thaliana]
          Length = 841

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 383 PSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDV 258
           P+G  L  +FV +  ++SGF +    G  +   ++ HV+LDV
Sbjct: 307 PNGP-LSSSFVRAKMLSSGFLIRPCDGGGSIIHIVDHVDLDV 347


>At1g20150.1 68414.m02520 subtilase family protein similar to
           subtilisin-type protease precursor GI:14150446 from
           [Glycine max]
          Length = 780

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = -3

Query: 482 HPNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSG 303
           +P+WSPA IR+ +    + + V +++T + I   +G++      G+  V   FG  SS G
Sbjct: 567 YPSWSPAAIRSAI----MTTAVQMTNTGSHITTETGEKATPYDFGAGQVTI-FG-PSSPG 620

Query: 302 SITTNQVLSHVN 267
            I     + ++N
Sbjct: 621 LIYETNHMDYLN 632


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,089,769
Number of Sequences: 28952
Number of extensions: 375690
Number of successful extensions: 1325
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)