Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d10f
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.4  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 449 VAGDQFGCITIELVSTLVPPLKSVTEPR 366
           V  +  G  ++E V T+  PLK+  EP+
Sbjct: 308 VVNNSVGGESVETVLTVTAPLKAKIEPQ 335


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 420 NRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSC 310
           +R GL     A         +Y+ A  G  +P+VSSC
Sbjct: 102 SRKGLFWSPAATAAATATEYKYSAAAPGPSDPSVSSC 138


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 290 LPLTDY*QLLTAG 328
           LPLTD  QLL AG
Sbjct: 238 LPLTDQVQLLRAG 250


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 471 DGHIITNGSRRPIRM 427
           + HI+  GSR PI +
Sbjct: 165 EAHIVPEGSRTPIEI 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,391
Number of Sequences: 336
Number of extensions: 3416
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)