Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d10f
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   2.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.0  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   6.8  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   9.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.0  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 430 PNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSGS 609
           P  S ++I  +     LPSPV+   T  T + P G   Q    GSS VA  + +   + +
Sbjct: 228 PQVSSSSITTNATYQNLPSPVS---TSTTSSQPYGAFHQPATTGSSFVADKWKMPMFTSN 284

Query: 610 ITTNQ 624
           +T+ Q
Sbjct: 285 VTSAQ 289


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 432  RMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVSGNKRSSA 274
            R H  R+ LNS       HG+++ + A  +   I P ++  +    GN+ S+A
Sbjct: 2607 RNHSTRSSLNSPRQFWAYHGSRSKKIADIVKRHIPPTINGKRSKNKGNEGSNA 2659


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -1

Query: 287 SEAPQTPVRGCPLTTMVISRPP**GNCPRVAGEPPTILVLLSPASSALRILSASGTP 117
           S+    P   CP+  + I  PP   +    +G PP+     +PA+ A    SA+  P
Sbjct: 30  SDPKAKPQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAP 86


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 88  NPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPA 198
           NP  GY   YG P ++     +     N  ++  SPA
Sbjct: 95  NPANGYAAVYGGPPSQLPPPPQPQSHPNVTVISASPA 131


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 201 SSRRATYNSGITQSCLFSLANPLCFWYTILSKVTVYRIFMQRQCKSTAVS 52
           SSR            L++   PL ++Y+ILS + V+   +   C ++ ++
Sbjct: 273 SSRVRGVRQNFPLKLLYTSVIPLIYFYSILSHLLVFAYALYSLCPNSLIT 322


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
 Frame = +1

Query: 409  TSSIVMHPNW--SPATIRNDVAVIYLPSPVTLSDTI-NTIALPSGQELQENFVGSSAVAS 579
            TSS V++ +   S +T+     VI   S ++ + +I ++++L S          SSA ++
Sbjct: 3469 TSSSVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFST 3528

Query: 580  G---FGLTSSSGSITTNQV 627
            G   F LTS +GS++++ +
Sbjct: 3529 GSSSFSLTSENGSVSSSSL 3547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,251
Number of Sequences: 5004
Number of extensions: 55281
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)