Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d10f
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05730.1 68416.m00642 expressed protein                             35   0.039
At2g46180.1 68415.m05742 intracellular protein transport protein...    30   1.1  
At5g62230.1 68418.m07814 leucine-rich repeat family protein / pr...    28   4.4  
At4g33590.1 68417.m04772 hypothetical protein                          28   5.9  
At2g28390.1 68415.m03450 SAND family protein similar to Sand (GI...    28   5.9  
At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-relate...    28   5.9  
At5g38970.3 68418.m04714 cytochrome P450, putative similar to Cy...    27   7.8  
At5g38970.1 68418.m04713 cytochrome P450, putative similar to Cy...    27   7.8  

>At3g05730.1 68416.m00642 expressed protein
          Length = 86

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 120 TILSKVTVYRIFMQRQCKSTAVSHQ*QAGRNECLHHDCIV 1
           T L +VTVY    +R C++    H   + + EC HHD +V
Sbjct: 33  TYLGEVTVYYPCRERDCEAQCYEHYPHSCKGECEHHDHVV 72


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 525 KSDRIDCIRQSNGTG*VNDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKND 361
           K  R+D  R SN      +G    N S+R      NR  +N+G  A + +GT+ND
Sbjct: 124 KESRLDLSRASNNNAIKGNGDHSPNRSQRSPTNWKNRNQMNNG-IASKPNGTEND 177


>At5g62230.1 68418.m07814 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 966

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 73  LPLHENPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFP 216
           L L EN +YG +  + +    ++++ E   L N ++ G  PATL Q P
Sbjct: 124 LDLSENLLYGDIP-FSI---SKLKQLETLNLKNNQLTGPVPATLTQIP 167


>At4g33590.1 68417.m04772 hypothetical protein 
          Length = 466

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 495 FV*YNQYDRSSKWTGITRKLCWILGSRFWLWSDQQLWI 608
           FV YNQYD  + W G+T  + +I  S        Q W+
Sbjct: 164 FVSYNQYDYGNLWHGLTAVVPFIAWSLRNQCEKPQKWV 201


>At2g28390.1 68415.m03450 SAND family protein similar to Sand
           (GI:3928166) [Takifugu rubripes]; contains Pfam PF03164:
           SAND family protein
          Length = 607

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 391 GGTRVETSSIVMHPNWSPATIRNDVAVIYLPSPVTLSDTINTI 519
           GGT    SS+V   +W+PAT  +  A   LP P  L     TI
Sbjct: 293 GGTDAVFSSLVHSFSWNPATFLH--AYTCLPLPYALRQATGTI 333


>At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-related
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 330

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = -1

Query: 401 LVPPLKSVTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCPLTTMVISRPP 222
           +VPP+ ++  P  T   V  + P        N +    ++ P T   G     + +  PP
Sbjct: 65  IVPPVTTIPPPTLTPPPVITIPPPTLTPPVTNPVTNPVTQYPPTQPSGTVPVPVPVVAPP 124

Query: 221 **GNCPRVAGE 189
              N P V+G+
Sbjct: 125 VVSNSPSVSGQ 135


>At5g38970.3 68418.m04714 cytochrome P450, putative similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 419

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 306 IDSCSLLVRWHQPRHERNG 362
           +  CS L+RW+Q R+ +NG
Sbjct: 15  VSLCSALLRWNQMRYTKNG 33


>At5g38970.1 68418.m04713 cytochrome P450, putative similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 465

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 306 IDSCSLLVRWHQPRHERNG 362
           +  CS L+RW+Q R+ +NG
Sbjct: 15  VSLCSALLRWNQMRYTKNG 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,749
Number of Sequences: 28952
Number of extensions: 306929
Number of successful extensions: 856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)