Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d08r
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      29   3.1  
SB_48860| Best HMM Match : LEA_1 (HMM E-Value=8.8)                     28   9.5  
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)                28   9.5  

>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 62   KSKSNRYTAKNIKHSRLG 115
            K K N+YTA+ ++H+RLG
Sbjct: 1051 KKKENKYTARRLQHTRLG 1068


>SB_48860| Best HMM Match : LEA_1 (HMM E-Value=8.8)
          Length = 182

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 41  LYGLISAKSKSNRYTAKNIKHSRLG 115
           L  L SAK K+  Y AKN K +R+G
Sbjct: 27  LLSLQSAKKKAENYAAKNDKKARVG 51


>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
          Length = 533

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 569 VFIGETNVQLKVEWAHRNAQESEIFRV 649
           +F   TN++L V WA +  +E+++F +
Sbjct: 87  IFEDNTNLKLAVRWALKKIEETKVFNI 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,129,902
Number of Sequences: 59808
Number of extensions: 409334
Number of successful extensions: 833
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)