Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d08f
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    71   9e-14
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   1.9  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   5.9  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   5.9  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.7  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   7.7  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   7.7  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 71.3 bits (167), Expect = 9e-14
 Identities = 42/156 (26%), Positives = 76/156 (48%)
 Frame = +1

Query: 76  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 255
           LSD  VQ ++  M++FI+Q                F +EK ++V++Q   I         
Sbjct: 3   LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62

Query: 256 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 435
                  I  SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQ
Sbjct: 63  RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122

Query: 436 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNK 543
           A+  L EP   +  RQ D  +V++ + KA +  K+K
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSK 158


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 334 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 459
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 465 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHV 289
           +S F  +EESL  K   +    F  + +  S ++   I+ I Y I THF     S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 346 YVRDLHALSVPSDEL 302
           +V DLHAL+VP D L
Sbjct: 56  FVADLHALTVPQDPL 70


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 75  RHGCCLFLTPLTRKTADIE 19
           RHGCC+    L R   DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 485 PTRLWWSPCSEKL 523
           P+ +WWSP S+K+
Sbjct: 228 PSTIWWSPDSDKI 240


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 292 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 399
           M +QARL+ L K+R+    +  ++ +K LAE+ +D K
Sbjct: 92  MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,194
Number of Sequences: 5004
Number of extensions: 33708
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)