Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d08f
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           51   8e-07
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.38 
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06)               30   1.5  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           29   2.6  
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)                29   2.6  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      28   4.6  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   4.6  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +1

Query: 322 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 501
           K  E   + +LDEA +RL +V +D   Y +++  LI Q L+QL+E  V IR R+ D +LV
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 502 E 504
           +
Sbjct: 128 K 128


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 307 RLKVLKVREDHVRNVLDEARKRLAEV 384
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -2

Query: 361 LHQVHYVRDLHALSVPSDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGPFRC* 182
           +HQVH VR +H   + +  L +  +    S+   P++PS  S P +    +    P    
Sbjct: 618 VHQVHLVRLVHLAHLCTCTLSTPSTPSTPSTRSTPSTPSTPSTPSTPSTPSTPSTPSLTH 677

Query: 181 TPPRPS 164
           TP  PS
Sbjct: 678 TPSTPS 683


>SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06)
          Length = 246

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 485 PTRLWWSPCSEKLNKTTRIRSR 550
           P R WWS  SEKL K  R++ R
Sbjct: 214 PYRSWWSLASEKLRKERRMKPR 235


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 334 DHVRNVLDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESL 510
           D V   L+E   R  E+    T    +L   L+    FQL    + + +RQTD  L E L
Sbjct: 164 DLVHAQLEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQL 223

Query: 511 LGKAQQDYK 537
             K Q D K
Sbjct: 224 AKKVQGDVK 232


>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
          Length = 214

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 352 VHYVRDLHALSVP-----SDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGP 194
           ++Y++D H    P     + E G A + + S S    A P F SIP   D +  +DGP
Sbjct: 19  LYYLQDTHHNWYPVYCDFTSEAGKAWTLVLSFSYANHAKPEFFSIPFLDDGSLSEDGP 76


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 310  LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 420
            LK+LK R  H RN   EA+++  E  ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/61 (19%), Positives = 27/61 (44%)
 Frame = -3

Query: 396 GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVRRXXXXXXXXXXXXLFIVFHNLET 217
           G L H +  +   ++++T  +  H Q+L ++++ H+R                V  +L+ 
Sbjct: 55  GHLRHLTSTVIGHLQHLTSTVIGHLQHLTSTVIGHLRHLTSTVIGHLQHLTSTVIGHLQN 114

Query: 216 L 214
           L
Sbjct: 115 L 115



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 7/36 (19%), Positives = 24/36 (66%)
 Frame = -3

Query: 393 VLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVR 286
           V++  ++ +   ++++T+ +  H Q+L ++++ H+R
Sbjct: 23  VIYTITRTVIGHLQHLTFTVIGHLQHLTSTVIGHLR 58


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +1

Query: 301  QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 411
            QA L+  +  +D+++   D  +KRLA++  + ++YS+
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 352  LDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQQ 528
            L+E   R  E+    T    +L   L+    FQL    + + +RQTD  L E L  K Q 
Sbjct: 5016 LEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQLAKKVQG 5075

Query: 529  DYK 537
            D K
Sbjct: 5076 DVK 5078


>SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 186 HRKGPSCPAATSQDYGIL*KEGEAG*TSEEDPIFEHAEPS 305
           H K  SC   +  D+  L   GEAG TSE +P   + +P+
Sbjct: 23  HWKSNSCKMDSDSDWDSL--SGEAGPTSEPEPTPRNLQPT 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,979
Number of Sequences: 59808
Number of extensions: 279045
Number of successful extensions: 857
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)