Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d06r
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 109 3e-24
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 99 4e-21
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 75 4e-14
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 31 1.2
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 30 2.0
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 29 2.7
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 29 3.6
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 29 3.6
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 29 4.7
AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cycl... 29 4.7
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 29 4.7
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 6.2
Z81533-10|CAB04329.1| 109|Caenorhabditis elegans Hypothetical p... 28 8.2
U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like pr... 28 8.2
AF003134-1|AAB54144.1| 522|Caenorhabditis elegans Trypsin-like ... 28 8.2
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 28 8.2
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 109 bits (261), Expect = 3e-24
Identities = 80/240 (33%), Positives = 117/240 (48%), Gaps = 7/240 (2%)
Frame = -1
Query: 712 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGR 533
T R+IGGS ++ + +P LL ++ CGG++++ +L+AAHC D
Sbjct: 53 TLDHRLIGGSESSPHSWPWTVQLLSRLGHHR----CGGSLIDPNFVLTAAHCFAKDRRPT 108
Query: 532 -WRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTADS-DLCILRSNSNIAYNNNVRPINIA 359
+ +RVG + SG H V + IHP YN S D I+R + + + RPI +
Sbjct: 109 SYSVRVGGHRSGSGSP-HRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLP 167
Query: 358 GANYNLGDNQVVWAAGWGATSLGGS-NSEQLRHVQVWTINQNACVQRYRPINRAITANML 182
+ +N++ GWG+T G S ++ LR + V ++ C I R +ML
Sbjct: 168 --SLPAVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSML 225
Query: 181 CSGVLDVGGRDQCQGDSGGPLLHNR----VLVGVCSWGQYCADRRFPGVNVRVSRFTSWI 14
C+G G D CQGDSGGPL+ R L GV SWG CA PGV V ++WI
Sbjct: 226 CAGY-SYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 98.7 bits (235), Expect = 4e-21
Identities = 74/241 (30%), Positives = 116/241 (48%), Gaps = 10/241 (4%)
Frame = -1
Query: 700 RIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDA-TGRWRI 524
R++GG T +P AAL N CG +IL++ +++AAHC D + +
Sbjct: 26 RVVGGFETVPGAFPWTAALR---NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEV 82
Query: 523 RVGSTFANS---GGVVHNVNRIIIHPNYNRRTADSDLCILR-SNSNIAYNNNVRPINIAG 356
VG N + + RI +P Y + D+ IL I +N +PI +
Sbjct: 83 VVGDWDNNQTDGNEQIFYLQRIHFYPLY-KDIFSHDIAILEIPYPGIEFNEYAQPICLPS 141
Query: 355 ANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPINRAITANMLCS 176
++ + +GWG S+G +E+L+ + IN+ CV + I +++ + C+
Sbjct: 142 KDFVYTPGRQCVVSGWG--SMGLRYAERLQAALIPIINRFDCVNSSQ-IYSSMSRSAFCA 198
Query: 175 GVLDVGGRDQCQGDSGGPLLHNR-----VLVGVCSWGQYCADRRFPGVNVRVSRFTSWIQ 11
G L+ GG D CQGDSGGP R VL GV SWG CA ++ PG+ V+ + SWI
Sbjct: 199 GYLE-GGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWIS 257
Query: 10 S 8
+
Sbjct: 258 A 258
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 75.4 bits (177), Expect = 4e-14
Identities = 75/251 (29%), Positives = 121/251 (48%), Gaps = 21/251 (8%)
Frame = -1
Query: 700 RIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGRWRIR 521
RIIGG++ I+ A L ++ N CG +++ +++AAHC T R +
Sbjct: 37 RIIGGNS--IDDGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQT-RSFVY 93
Query: 520 VGSTFANSGGVVHNVNRIIIHPNYNRRTADSDLCILRSNSNIAYNNNVRPINIAGANYNL 341
V N+ +V IH YN +TAD+D+ +LR +S+++ ++P+ + + L
Sbjct: 94 VREP-KNNRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLS-KLGIKPVCLVHDDSKL 151
Query: 340 ---GDNQVVWAAG--WGATSLGGS---NSEQLRHVQVWTINQNACVQRYR---PINRAIT 194
N VV G G S G NS+ L+ V I+ + CV+ +R ++ IT
Sbjct: 152 LKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKIT 211
Query: 193 ANMLCSGVLDVGGRDQCQGDSGGPLLHNR-----VLVGVCSWGQYCAD-----RRFPGVN 44
+C+G G GDSGGPLL ++ V +G+ S+G D +FPGV
Sbjct: 212 GYQICAGAYLHG---TAPGDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVY 268
Query: 43 VRVSRFTSWIQ 11
R+S++ WIQ
Sbjct: 269 TRISKYVPWIQ 279
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 428 TVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKDVSTT 607
T ++T +I G +V T TV GT T PT + T ++GT ++ + +TT
Sbjct: 205 TTTTTVLINGTTTTTVPTNETTTTVPLNGTTTTVPTNETTTTSPLNGTTTTTVPINGATT 264
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 51 PGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEHNMLAVIA 203
P K+R+ + P++ P + + R + PW S P + P + V A
Sbjct: 109 PEKKRAVEPTPKQAAPIKEKSKSRESKKEPWKTSTAPAATAPVTETVTVAA 159
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Frame = +2
Query: 356 TSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPT 535
T++ T + IT EVT ++ V + T T T T TPT
Sbjct: 29 TADPTTTTTEATTTTEITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPT 88
Query: 536 ACSVTVWTVSGTKDRSLVKDVSTTRXXXXXXXXCIQQSSYTGI---LVNVGRGATNNP 700
+ T T + T + +TT ++ V++G G NNP
Sbjct: 89 TTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPTTTTTTMPPCNPNAVSLGMGDANNP 146
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 24 VKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEH 182
+KR TR L P K+ Q+ R R + PP+SP TS P+H
Sbjct: 1493 LKRRTRELDPEKKGDKTNIVQD---LRARFEMKSPPKSPPKDDEEGTSTDPKH 1542
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 24 VKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEH 182
+KR TR L P K+ Q+ R R + PP+SP TS P+H
Sbjct: 1669 LKRRTRELDPEKKGDKTNIVQD---LRARFEMKSPPKSPPKDDEEGTSTDPKH 1718
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = +2
Query: 293 ERCSTPTSSPNNLVITKIVIGTSNINRTNVV--VISYVGITA*DAEVTVSSTSVIVGMND 466
E T++P T I TS+ T+ V++ +T+ T +ST
Sbjct: 256 ETTKPTTTTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPT------ 309
Query: 467 NSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKDV 598
+ + TP+ T T+T T S + T+S TK + D+
Sbjct: 310 TTTTMQTTTPSTTSTPTTTSTTTTTSASTTTISTTKPPTTQIDI 353
>AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cyclase
protein 2 protein.
Length = 1080
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 448 NRRTADSDLCILRSNSNIAYNNNVRPINIAGANYNL 341
N AD D L ++ YNNN+R N+A N NL
Sbjct: 913 NESEADYDDIYLEKQNSGKYNNNIRHGNMAFRNANL 948
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 19 KR*NGKRER*HQGSDGQRSTVPKSR-HQRGRGCGGEDHRSHPGTGRDHRRPK 171
KR + +G+D +RST H+ R HR H G R+HR K
Sbjct: 259 KRKRSRSRSTDRGADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHK 310
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 43 R*HQGSDGQRSTVPKSRHQRGRGCGGEDHRS-HPGTGRDHRRPKH 174
R H G G RS P RH G G GG RS PG H H
Sbjct: 236 RGHGGRHGSRSGSPGGRHGHG-GHGGHGSRSGSPGGRHGHGGSGH 279
>Z81533-10|CAB04329.1| 109|Caenorhabditis elegans Hypothetical
protein F36G9.15 protein.
Length = 109
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 51 PGKRRSAQYCPQEQT-PTRTRLWRRG 125
P K +SAQ CP QT P +T + R G
Sbjct: 53 PAKEKSAQTCPTAQTPPAKTPMERSG 78
>U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like
protease protein 6 protein.
Length = 360
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 673 INQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHC 557
IN Y + + TW+ + C G + + R IL+A HC
Sbjct: 58 INTYTNVKNIDETWS-----KHCSGTLTSPRHILTATHC 91
>AF003134-1|AAB54144.1| 522|Caenorhabditis elegans Trypsin-like
protease protein 7 protein.
Length = 522
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 610 SCGGNILNQRSILSAAHCPYG-DATGRWRIRVGSTFANS 497
+C G I++ R IL A HC G + G W + + TF S
Sbjct: 192 TCTGTIVSPRHILIATHCFAGQNRDGSWNL-IEDTFDRS 229
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 27 KRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPES 137
+R +RT + +RRS +TP R RR PP S
Sbjct: 99 RRRSRTRSRDRRRSPPRRRDRRTPPRRSPGRRSPPRS 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,796,182
Number of Sequences: 27780
Number of extensions: 443751
Number of successful extensions: 1392
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -