Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d06f
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 3.7
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 3.7
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 4.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.8
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 4.8
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 6.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.4
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 25 8.5
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 25 8.5
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = -3
Query: 491 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMND--NSV 318
STP +S + L + + ++ +N + + S TA + ++S+SV+ +S
Sbjct: 3357 STPVTSSSVLNSSTPITSSTVVNSSTPITSS----TALNTSTPITSSSVLNSSTPITSST 3412
Query: 317 HVMHNTPTVGKGGTNTNTPTACSVTV 240
V +TP NT+TP S V
Sbjct: 3413 VVNSSTPITSSTALNTSTPITSSTVV 3438
Score = 26.6 bits (56), Expect = 2.8
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = -3
Query: 491 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMND--NSV 318
STP +S L + + +S +N + + S V T+ ++S+SV+ +S
Sbjct: 1293 STPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTS----TPITSSSVLNSSTPITSST 1348
Query: 317 HVMHNTPTVGKGGTNTNTPTACSVTVWT 234
V +TP NT+TP S V T
Sbjct: 1349 VVNSSTPITSSTVVNTSTPITSSTVVNT 1376
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = -3
Query: 491 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMND--NSV 318
STP +S + + + +S +N + + S TA + ++S+SV+ +S
Sbjct: 2133 STPITSSTVVNSSTPITSSSVLNSSTPITSS----TALNTSTPITSSSVLNSSTPITSST 2188
Query: 317 HVMHNTPTVGKGGTNTNTPTACSVTVWT 234
V +TP NT+TP S V T
Sbjct: 2189 VVNSSTPITSSTVVNTSTPITSSTVVNT 2216
Score = 25.4 bits (53), Expect = 6.4
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = -3
Query: 491 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHV 312
STP +S ++++ + I +S + T+ + S + + +T SST++ S V
Sbjct: 873 STPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNS-STPIT-SSTALNTSTPITSSSV 929
Query: 311 MHN-TPTVGKGGTNTNTPTACS 249
+++ TP G NT+TP S
Sbjct: 930 LNSSTPITSSTGLNTSTPITSS 951
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 234 CPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTADSDLCILRSNSNIAYNNN 413
C G + + I + +F S + H +HPNY+ R +S+ L + I N N
Sbjct: 315 CELGKESSLFSISMVKSFLVSADMAH-----AMHPNYSSRYENSNTPFLNKGTVIKVNAN 369
Query: 414 VR-PINIAG 437
R N AG
Sbjct: 370 QRYTTNSAG 378
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 393 WNYCVRCRGHC-QQYVCYSWDE**FCSRYAQH 301
W C RC+G Q +C S D F R A+H
Sbjct: 1037 WTQCQRCQGSMHQDVICTSRDCPIFYMRIAEH 1068
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 26.2 bits (55), Expect = 3.7
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 1/132 (0%)
Frame = -3
Query: 596 DSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVITKIVIGTSNINRT 417
++ V+GS+ + I G E+ + P+ T T ++ T + T
Sbjct: 985 ETIVSGSIPFTSTIPAQGTTSGTVEV--VEPTAGTVTETIISGSVGYTSTFPAQGTTSGT 1042
Query: 416 NVVVISYVG-ITA*DAEVTVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTV 240
VV G +T ++ TS I S V PT G + T + T+ T
Sbjct: 1043 VEVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEIVVPTAGTVTSTTGSGTSWFTTT 1102
Query: 239 WTVSGTKDRSLV 204
+GT+ S++
Sbjct: 1103 VPATGTRSGSVI 1114
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 183 SCGGNILNQRSILSAAHCPYGDA 251
+ GN+LN + S ++CPY A
Sbjct: 1451 TAAGNLLNPNATTSCSYCPYQTA 1473
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.8
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Frame = -3
Query: 491 STP-TSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVH 315
+TP T + + V + I ++ NRT+ S I+ + SSTS + +
Sbjct: 622 TTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSN 681
Query: 314 VMHNTPTVGKGGTNTNTP---TACSVTVWTVSGTKDRSL-VKDVSTT 186
V ++ TV T+ P T +T ++S + S VK ST+
Sbjct: 682 VTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTS 728
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 156 TWNWNQWWQSCGG 194
T N+ WW SCGG
Sbjct: 114 TVNYPTWWDSCGG 126
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +3
Query: 453 GDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQ 569
G + VWA + S ++ R +++W ++ CVQ
Sbjct: 505 GHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQ 543
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 6.4
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = -3
Query: 443 IGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIV--GMNDNSVHVMHNTPTVGKGGTNT 270
I TS+ N N S+ T + S+TS+ G+N NS+ ++ T T
Sbjct: 804 ISTSSTNEYNT---SFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAY 860
Query: 269 NTPTACSVTVWTVSGTKDRSLVKDVSTT 186
T + S T T G + +S+T
Sbjct: 861 TTDSVTSTTALTSQGPSSSVVSSSLSST 888
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 390 NYCVRCRGHCQQYVCYSWDE 331
+YC+R G+C Y Y WD+
Sbjct: 173 DYCLR--GYCTVYKYYKWDK 190
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 276 GSTFANSGGVVHNVNRIIIHPNYNRR 353
GS N GG++ N I HP R
Sbjct: 175 GSDMGNDGGMIPTFNHPIFHPENRSR 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,422
Number of Sequences: 5004
Number of extensions: 56059
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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