Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d06f
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ... 29 3.1
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ... 29 3.1
At2g48020.2 68415.m06011 sugar transporter, putative similar to ... 28 4.1
At2g48020.1 68415.m06010 sugar transporter, putative similar to ... 28 4.1
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 28 5.4
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 9.5
At3g10240.1 68416.m01225 F-box protein-related contains weak Pfa... 27 9.5
At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase... 27 9.5
>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +3
Query: 432 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI 584
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPV 162
>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +3
Query: 432 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI 584
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPV 162
>At2g48020.2 68415.m06011 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 78 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 191
P N + + GG T +N + G A+ YT+N+ W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426
>At2g48020.1 68415.m06010 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 78 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 191
P N + + GG T +N + G A+ YT+N+ W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 489 HPNQQPKQLGYHQDCN 442
HP +PK LGY QD N
Sbjct: 356 HPTTKPKDLGYQQDWN 371
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +3
Query: 396 IAYNNNVRPINIAGANYNLGDNQVVWAAGWG---ATSLGG 506
+A NNN N G N+ G+N+ WG A +GG
Sbjct: 350 VANNNNNNNNNAIGGNFQGGENRGFGRGNWGRGNAQGMGG 389
>At3g10240.1 68416.m01225 F-box protein-related contains weak
Pfam:PF00646 F-box domain
Length = 389
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 351 VCYSWDE**FCSRYAQHPHCWQRWNQ-HEYANGL*RHRMD 235
+C+ +E F S QH ++ WN+ H Y+ + R+ M+
Sbjct: 76 LCFKANEKFFVSSIPQHRQTFETWNKSHSYSQLIDRYHME 115
>At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase,
putative / ADP-glucose pyrophosphorylase, putative
(APS2) similar to SP|P52416 from [Vicia faba]; contains
Pfam profile PF00483: Nucleotidyl transferase; identical
to cDNA GI:31408039
Length = 476
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -3
Query: 497 RCSTPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVG 336
RC P SS + VIT +IG I V+ S VG+ A+ + S+IVG
Sbjct: 339 RC-LPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVG 391
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,625,742
Number of Sequences: 28952
Number of extensions: 309706
Number of successful extensions: 897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -