Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d04r
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 225 7e-60
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 203 2e-53
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 29 0.90
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 2.1
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 26 6.4
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 6.4
SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera... 26 6.4
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 8.4
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 225 bits (549), Expect = 7e-60
Identities = 103/166 (62%), Positives = 128/166 (77%)
Frame = -2
Query: 706 LKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDD 527
+K P + L+ +L D+Y++ K +P+VSIEDPFDQDDWSAW ++ T QIVGDD
Sbjct: 262 IKAAKPKPENKLTYQQLTDLYVELSKKYPIVSIEDPFDQDDWSAWTHMKAETDFQIVGDD 321
Query: 526 LTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDT 347
LTVTN KR+ TA++KK N LLLKVNQIGSVTES++A ++ + GWG MVSHRSGET DT
Sbjct: 322 LTVTNVKRLRTAIDKKCANALLLKVNQIGSVTESLNAVRMSYEAGWGVMVSHRSGETADT 381
Query: 346 FIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAG 209
FI+ L VG+ GQ+K+GAPCRSERLAKYN++LRIEEELG YAG
Sbjct: 382 FISHLTVGIGAGQLKSGAPCRSERLAKYNELLRIEEELGSEGVYAG 427
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 203 bits (495), Expect = 2e-53
Identities = 92/165 (55%), Positives = 126/165 (76%)
Frame = -2
Query: 703 KNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDDL 524
K+ P + L KL + Y I+ +P+V IEDPF ++DW A++ ++ +T ++++ DDL
Sbjct: 264 KSEHPKPENKLDYKKLYEKYSALIEKYPIVFIEDPFSEEDWGAFSYMSSKTKVEVIADDL 323
Query: 523 TVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTF 344
TVTN KR++ A+E K N LL+K+NQIGS++E+IDA +AKK GWG MVSHRSGET+D+F
Sbjct: 324 TVTNVKRLSKAIELKCANALLVKINQIGSLSETIDAANMAKKAGWGLMVSHRSGETDDSF 383
Query: 343 IADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAG 209
IA L VGL GQ+K+GAPCRSERLAKYN++LRIE+ LG +A YAG
Sbjct: 384 IAHLAVGLEAGQMKSGAPCRSERLAKYNELLRIEDNLGDSAIYAG 428
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 28.7 bits (61), Expect = 0.90
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -2
Query: 502 IATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVG 323
I A+ +K CN +L + + IG VT AH+ K GT++ G T+ ++ L+ G
Sbjct: 40 IDEAIFEKNCNRMLDRASDIG-VT--FRAHVKTHKTIEGTLLQLGDGRTKAVVVSTLMEG 96
Query: 322 LS 317
S
Sbjct: 97 FS 98
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 155 TEFYVFLREFLDRSTEVLP--GVFGVDAKFLFNAQNLVV-LGETLRATRGAGLD 307
+ FY + E RS+EVLP +DAK A+ +++ T A GA LD
Sbjct: 1630 SSFYSLIHESFSRSSEVLPTSSDTNLDAKRAEEAEMIMIETPPTAEANTGAKLD 1683
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 317 HGSD-QDRRPVSLGASRQVQPNSAH*RGTWRQ 225
+GSD RRP LG ++V + +G+WR+
Sbjct: 52 YGSDITPRRPKQLGLPKEVNTSECIDQGSWRK 83
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 323 FVHGS-DQDRRPVSLGASRQVQPN 255
FV GS +Q+RRP+S +QPN
Sbjct: 519 FVQGSGNQNRRPISFPVISNMQPN 542
>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
N-acetyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 122 KKVVLTMFVLNKQFNAYHVLQDCSE 48
K +VLT+ L N+Y V+ DCS+
Sbjct: 60 KLMVLTLIKLAFSLNSYKVILDCSD 84
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 8.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 15/54 (27%)
Frame = -2
Query: 697 PDSNPG-----DYLSSDKLADVYLDFIKDFPM------VSIE----DPFDQDDW 581
P+++PG D L SD+LA++YL K M VS++ +P D D W
Sbjct: 154 PETDPGNMETTDPLFSDELAEIYLSIHKCMDMRHKYIRVSLQGELDNPIDDDSW 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,286
Number of Sequences: 5004
Number of extensions: 62657
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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