Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d04r
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 248 3e-66
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 232 2e-61
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 189 2e-48
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 184 6e-47
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 169 1e-42
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 29 5.0
06_03_0067 - 16167420-16167845,16168291-16168406,16168634-161688... 28 8.8
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 248 bits (608), Expect = 3e-66
Identities = 119/172 (69%), Positives = 138/172 (80%), Gaps = 3/172 (1%)
Frame = -2
Query: 694 DSNPGDY-LSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRT--PIQIVGDDL 524
D+N G + +S D L DVY F+ ++P+VSIEDPFDQDDW+ +A LT +QIVGDDL
Sbjct: 301 DNNDGSHKISGDSLKDVYKSFVSEYPIVSIEDPFDQDDWATYAKLTDEIGQQVQIVGDDL 360
Query: 523 TVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTF 344
VTNP R+A A+ +K CN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTF
Sbjct: 361 LVTNPTRVAKAISEKTCNALLLKVNQIGSVTESIEAVRMSKRAGWGVMASHRSGETEDTF 420
Query: 343 IADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 188
IADL VGLSTGQIKTGAPCRSERLAKYNQ+LRIEEELG A YAG+ FR PV
Sbjct: 421 IADLSVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGDAAVYAGEKFRAPV 472
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 232 bits (568), Expect = 2e-61
Identities = 109/151 (72%), Positives = 125/151 (82%)
Frame = -2
Query: 703 KNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDDL 524
KN ++ LS+ +L D+Y +F+KDFP+VSIEDPFDQDDWS+WA+L IQIVGDDL
Sbjct: 310 KNQPNDGAHVLSAQRLCDLYKEFVKDFPIVSIEDPFDQDDWSSWASLQSSVNIQIVGDDL 369
Query: 523 TVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTF 344
VTNPKRIA A+ KKACN LLLKVNQIG+VTESI A L +K GWG MVSHRSGETED F
Sbjct: 370 LVTNPKRIAEAIGKKACNALLLKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNF 429
Query: 343 IADLVVGLSTGQIKTGAPCRSERLAKYNQIL 251
IADL VGL++GQIKTGAPCRSERLAKYNQI+
Sbjct: 430 IADLAVGLASGQIKTGAPCRSERLAKYNQIV 460
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 189 bits (461), Expect = 2e-48
Identities = 86/160 (53%), Positives = 115/160 (71%)
Frame = -2
Query: 676 YLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIA 497
+ ++D L ++Y ++P+VSIE PFD+DDW T Q+VGDDL +++P+RI
Sbjct: 320 FKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQVVGDDLLMSDPERIK 379
Query: 496 TAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLS 317
AV + CN L+LK NQ+G+VTE+I+ AK WG MVSHRSG+T+D+FIADL VG +
Sbjct: 380 RAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSGDTDDSFIADLAVGAA 439
Query: 316 TGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFR 197
GQIK GAPCR E L+KYNQ+LRIEEELG + YAG+N+R
Sbjct: 440 AGQIKAGAPCRGECLSKYNQLLRIEEELGSDGVYAGENWR 479
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 184 bits (448), Expect = 6e-47
Identities = 95/174 (54%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Frame = -2
Query: 703 KNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRT--PIQIVGD 530
K +++ +S D L +VY F+ ++P+VSIEDPFDQDDW +A +T +QIVGD
Sbjct: 271 KEENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQDDWEHYAKMTAEIGEQVQIVGD 330
Query: 529 DLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETED 350
DL VTNP R+A A+++K+CN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETED
Sbjct: 331 DLLVTNPTRVAKAIQEKSCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETED 390
Query: 349 TFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 188
TFIADL VGL+T +LRIEEELG A YAG FR PV
Sbjct: 391 TFIADLAVGLAT-------------------LLRIEEELGAAAVYAGAKFRAPV 425
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 169 bits (412), Expect = 1e-42
Identities = 97/188 (51%), Positives = 118/188 (62%), Gaps = 16/188 (8%)
Frame = -2
Query: 703 KNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRT--PIQIVGD 530
K +++ +S D L +VY F+ ++P+VSIEDPFDQDDW +A +T +QIVGD
Sbjct: 235 KEENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQDDWVHYAKMTEEIGDQVQIVGD 294
Query: 529 DLTVTNP--------------KRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNG 392
DL VTNP +R+A A++ KACN LLLKVNQIGSVTESI+A ++K+ G
Sbjct: 295 DLLVTNPTFPCWLQYSNQFDLQRVAKAIKDKACNALLLKVNQIGSVTESIEAVKMSKRAG 354
Query: 391 WGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYA 212
WG M SHRSGETEDTFIADL VGLST +LRIEEELG A YA
Sbjct: 355 WGVMTSHRSGETEDTFIADLAVGLST-------------------LLRIEEELGAAAVYA 395
Query: 211 GKNFRRPV 188
G FR PV
Sbjct: 396 GAKFRAPV 403
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 249 ALKRNLASTPNTPGRTSVDRSKNSLKKT*NSVFLSYPHFDSNKKSSIDY 103
ALKR + T G S+DRS +SLK + V S P+ +S SS Y
Sbjct: 515 ALKRPMGKTD---GNISLDRSNSSLKGSLYRVNESNPNMESTGASSHQY 560
>06_03_0067 -
16167420-16167845,16168291-16168406,16168634-16168871,
16168903-16169033,16169100-16169289
Length = 366
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 541 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQ--IGSVTESIDAHLLAKKNGWGTMVSHR 368
+VGDDL PKR A ++ C ++ +Q IG + HL+A ++ V
Sbjct: 215 VVGDDLDNAVPKRDARFTNRRWC----VRDSQIVIGGAGMFVFQHLIATQSPATAAVMAG 270
Query: 367 SGETEDTFIADLVVGL 320
T+D A +VG+
Sbjct: 271 ESSTDDAAAAYTLVGI 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,729,880
Number of Sequences: 37544
Number of extensions: 415376
Number of successful extensions: 924
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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