Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d04r
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                  147   9e-36
SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_35743| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_54101| Best HMM Match : MORN (HMM E-Value=2.8e-11)                  28   6.8  
SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 28   6.8  

>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score =  147 bits (356), Expect = 9e-36
 Identities = 75/104 (72%), Positives = 79/104 (75%)
 Frame = -2

Query: 619 MVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIG 440
           +VSIED FDQD W AW+ LTG   IQIVG          I TA+EKKACNCLLLKVNQIG
Sbjct: 129 VVSIEDAFDQDHWDAWSKLTGNVDIQIVG----------IQTAIEKKACNCLLLKVNQIG 178

Query: 439 SVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQ 308
           SVTESI A  LA+ NGWG MVSHRSGETEDTFIADLVVGL  GQ
Sbjct: 179 SVTESIKACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCAGQ 222


>SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
 Frame = -2

Query: 616 VSIEDPFDQDDWSAWANLTGRTPIQ--IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQI 443
           ++  D +DQD   AW  L  R   +  ++G++L   NP  +AT V +K  +  LL  +  
Sbjct: 233 IAANDFYDQDR-EAWTKLNQRIGEKCFVIGNELYRRNPSILATGVTEKLSSVALLSADNA 291

Query: 442 GSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVV----------GLSTGQ--IKT 299
            +VTE  +        G   M+S    E  +T   D V            ++TG   I+ 
Sbjct: 292 NTVTELWEKIRAVADQGGLVMLSKGQVEDVNTLAVDFVSTVVNTIPVANAVATGARFIRL 351

Query: 298 GAPCRSERLAKYNQILRIEEELGVNAK 218
           G P R E + K+ +++ IE+ L  N K
Sbjct: 352 GGPARMEHVTKHRRMIEIEQILEQNGK 378


>SB_35743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
 Frame = +2

Query: 200 EVLPGVFGVDAKFLFNAQNLVV--LGET--LRATRGAGLDLTRGQTNYQVGNKGIFGLTR 367
           E+LPG+ G  A F+F A    V  LGE   L     A   + R Q++++  NKG     R
Sbjct: 235 ELLPGLVGSIANFVFKAAEEAVKFLGENAWLLILAVAAFLVRRMQSSHR--NKGALPPGR 292

Query: 368 SVRDHCA-PSVLLGQQVSIN*LCYAADLIDLQ*QTVA--CLLLNCSSDTLRVCHR 523
              D    P +  G  +S + LC   D +  +   V     L+  + D LRV H+
Sbjct: 293 HAVDPVLHPRMPTGHVMSTDWLCLGVDRVCAELHRVRGFLQLIVVADDALRVYHQ 347


>SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
 Frame = +2

Query: 200 EVLPGVFGVDAKFLFNAQNLVV--LGET--LRATRGAGLDLTRGQTNYQVGNKGIFGL-- 361
           E+LPG+ G  A F+F A    V  LGE   L     A   + R Q++++  N GI  L  
Sbjct: 274 ELLPGLVGSIANFVFKAAGEAVKFLGENAWLLILAVAAFLVRRMQSSHR-NNCGILALPP 332

Query: 362 -TRSVRDHCAPSVLLGQQVSIN*LCYAADLIDLQ*QTVA--CLLLNCSSDTLRVCHR 523
              +V     P +  G  +S + LC   D +  +   V     L+  + D LRV H+
Sbjct: 333 GRHAVDPVLHPRMPTGHVMSTDWLCLGVDRVCAERHGVRGFLQLIVVAHDALRVYHQ 389


>SB_54101| Best HMM Match : MORN (HMM E-Value=2.8e-11)
          Length = 99

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +1

Query: 580 TNHPGQKDPQWTPWENL**SPNRHQLIYLMTGSRL--DWN 693
           T HP  ++P W  W+        H  +Y + G +   +WN
Sbjct: 4   TKHPKTREPLWKEWDYKAQKKGVHHTVYSVNGDQYTGEWN 43


>SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +1

Query: 580 TNHPGQKDPQWTPWENL**SPNRHQLIYLMTGSRL--DWN 693
           T HP  ++P W  W+        H  +Y + G +   +WN
Sbjct: 4   TKHPKTREPLWKEWDYKAQKKGVHHTVYSVNGDQYTGEWN 43


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 264 TTKFCALKRNLASTPNTPGRTSVDRSKNSLKKT 166
           T++  +LKR+L ++P T  RTS+  S+ +  KT
Sbjct: 111 TSRKTSLKRSLKTSPKTSRRTSLKTSQKTSPKT 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,888,114
Number of Sequences: 59808
Number of extensions: 479509
Number of successful extensions: 1308
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)