Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d04r
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              25   0.56 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.9  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   5.2  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   5.2  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   5.2  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   5.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   6.8  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   6.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.0  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 580 SAWANLTGRTPIQIVGDDLTVT 515
           S W ++TG TP+  V D ++ T
Sbjct: 90  SQWEDVTGSTPLTFVNDTVSFT 111


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 305 DLTRGQTNYQVGNKGIFGLTRS 370
           D   G  N+Q G +GIFG++ S
Sbjct: 243 DYNIGGLNFQWGEEGIFGMSLS 264


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 535 GDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTE 428
           G+   +TN +R+A+   +  CN   L V+   +V +
Sbjct: 521 GEICLLTNARRVASVRAETYCNLFSLSVDHFNAVLD 556


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 535 GDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTE 428
           G+   +TN +R+A+   +  CN   L V+   +V +
Sbjct: 489 GEICLLTNARRVASVRAETYCNLFSLSVDHFNAVLD 524


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 718 IRP*LKNPDSNPGDYLSS 665
           +RP LKNPD+ P  +LSS
Sbjct: 394 VRPFLKNPDAIPA-FLSS 410


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 336 SAIKVSSVSPDL*ET 380
           S IKV S+SPDL ET
Sbjct: 184 SNIKVISISPDLVET 198


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 700  NPDSNPGDYLSSDKLADVY 644
            NPD  P +YL  D +   Y
Sbjct: 972  NPDQKPTEYLLEDSMKQQY 990


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 192 RSKNSLKKT*NSVFLSYPHFDSNKKSS 112
           RS +S +    S+  S PH D NK+ S
Sbjct: 36  RSPSSSRSPSPSLLTSQPHQDHNKEKS 62


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 628 DFPMVSIEDPFDQDDWSAWANL 563
           DFP +S ED  +  +W+ W  L
Sbjct: 11  DFPSLSFEDSDEGSNWN-WNTL 31


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 628 DFPMVSIEDPFDQDDWSAWANL 563
           DFP +S ED  +  +W+ W  L
Sbjct: 55  DFPSLSFEDSDEGSNWN-WNTL 75


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 628 DFPMVSIEDPFDQDDWSAWANL 563
           DFP +S ED  +  +W+ W  L
Sbjct: 55  DFPSLSFEDSDEGSNWN-WNTL 75


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 628 DFPMVSIEDPFDQDDWSAWANL 563
           DFP +S ED  +  +W+ W  L
Sbjct: 55  DFPSLSFEDSDEGSNWN-WNTL 75


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 255 IWLYLARRSERHG 293
           +W+Y ++ SE HG
Sbjct: 198 LWVYKSKASEEHG 210


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 255 IWLYLARRSERHG 293
           +W+Y ++ SE HG
Sbjct: 166 LWVYKSKASEEHG 178


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 604 DPFDQDDWSAWANLT 560
           +P+D+D  S W  +T
Sbjct: 112 NPYDRDSLSCWLQMT 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,488
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)