Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d04f
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   3.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 124 NQSRLVKSLTLVATLLWKLIW*QSLACSGQLYPLV 228
           N+    KSL L   ++W +        SG  YP++
Sbjct: 341 NKVEYAKSLNLGGVMIWSIETDDFRGVSGTKYPIL 375


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +2

Query: 551 CTSIQCDQWRITCWK 595
           C + +C+  + TCW+
Sbjct: 873 CVTCKCENGKPTCWR 887


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 127  QSRLVKSLTLVATLLWKL 180
            +SRLVK+L L   ++W L
Sbjct: 2646 KSRLVKALKLGGGMVWAL 2663


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 246 HEHQWMHQRVQLPGTSQALLPD 181
           H+HQ     VQ+P    A+ PD
Sbjct: 25  HQHQHYGAAVQVPQGGGAVQPD 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,735
Number of Sequences: 336
Number of extensions: 2657
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)