Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d04f
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877...   221   5e-58
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429...   197   7e-51
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193...   186   1e-47
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781...   132   2e-31
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877...   127   6e-30
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638...    29   3.0  
01_01_0796 + 6190931-6192745                                           29   4.0  
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538...    27   9.2  

>09_03_0117 -
           12486672-12486818,12487438-12487488,12487583-12487729,
           12488037-12488354,12488450-12488604,12488941-12489248,
           12490644-12491038
          Length = 506

 Score =  221 bits (539), Expect = 5e-58
 Identities = 110/170 (64%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
 Frame = +3

Query: 117 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGK 293
           V++SI+ARQI DSRGNPTVEVDLV   G L R+AVPSGASTG++EALELRD   + Y GK
Sbjct: 50  VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGK 109

Query: 294 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 473
           GVL A++NINE+IAP+L    ++V  Q ++D +ML +DGT NKSKLGANAILGVSL    
Sbjct: 110 GVLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCR 167

Query: 474 XXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMI 623
                  VPLYKH+ +LAG  ++V+PVPAFNVINGGSHAGN LAMQEFM+
Sbjct: 168 AGAGAKEVPLYKHIQELAGTKELVMPVPAFNVINGGSHAGNNLAMQEFML 217


>10_02_0022 -
           4290708-4290788,4291254-4291305,4291396-4291484,
           4291565-4291615,4291699-4291893,4292010-4292090,
           4292190-4292252,4292480-4292554,4292630-4292710,
           4292784-4292888,4292977-4293057,4293156-4293242,
           4293322-4293369,4293923-4293987,4294109-4294172,
           4294828-4294896
          Length = 428

 Score =  197 bits (480), Expect = 7e-51
 Identities = 111/176 (63%), Positives = 128/176 (72%), Gaps = 8/176 (4%)
 Frame = +3

Query: 120 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 296
           I S+KARQIFDSRGNPTVEVD+    G F RAAVPSGASTGV+EALELRD   S+Y GKG
Sbjct: 5   IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63

Query: 297 VLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAILGVS 458
           V  A+ N+N +IAP L     + T Q E+D  M++ LDGT+N     K KLGANAIL VS
Sbjct: 64  VSKAVDNVNSVIAPALI--GKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121

Query: 459 LXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQ-EFMI 623
           L           +PLY+H+A+LAGN  +VLPVPAFNVINGGSHAGNKLAMQ EFMI
Sbjct: 122 LAICKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQAEFMI 177


>06_01_0262 -
           1930552-1930632,1931096-1931152,1931236-1931287,
           1931373-1931461,1931551-1931601,1931696-1931890,
           1932015-1932095,1932205-1932267,1933045-1933119,
           1933194-1933352,1933353-1933463,1933536-1933616,
           1933721-1933807,1933920-1933967,1934357-1934421,
           1935002-1935065,1935220-1935288
          Length = 475

 Score =  186 bits (453), Expect = 1e-47
 Identities = 105/178 (58%), Positives = 126/178 (70%), Gaps = 10/178 (5%)
 Frame = +3

Query: 108 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEY 284
           + + I+S+KARQIFDSRGNPTVEVD+    G F R AVPSGASTG++EALELRD   S+Y
Sbjct: 1   MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDY 59

Query: 285 HGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAI 446
            GKGVL A+ N+N +I P L     + T+Q +ID  M++ LDGT N     K KLGANAI
Sbjct: 60  LGKGVLKAVSNVNTIIGPALI--GKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAI 117

Query: 447 LGVSLXXXXXXXXXXNVPLYK---HLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQ 611
           L VSL           +PLY+   H+A+LAGN  +VLPVPAFNVINGGSHAGNKLAMQ
Sbjct: 118 LAVSLAVCKAGAMVKKIPLYQKLQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQ 175


>03_02_0365 -
           7816966-7817046,7817441-7817492,7817590-7817678,
           7817762-7817854,7817900-7818094,7818172-7818249,
           7818353-7818415,7818806-7818880,7818958-7819038,
           7819329-7819409,7819516-7819602,7819682-7819729,
           7820317-7820381,7820566-7820629,7821254-7821322
          Length = 406

 Score =  132 bits (319), Expect = 2e-31
 Identities = 78/137 (56%), Positives = 93/137 (67%), Gaps = 7/137 (5%)
 Frame = +3

Query: 120 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 296
           I+S+KARQIFDSRGNPTVEVD+    G F RAAVPSGASTGV+EALELRD   S+Y GKG
Sbjct: 5   IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63

Query: 297 VLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVS 458
           VL A+ N+N +I P L     + T+Q  ID  M+ +LDGT+N     K KLGANAIL VS
Sbjct: 64  VLKAVDNVNSIIGPAL--IGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121

Query: 459 LXXXXXXXXXXNVPLYK 509
           L           +PLY+
Sbjct: 122 LALCKAGAIIKKIPLYQ 138


>03_02_0477 -
           8770905-8770985,8771164-8771361,8771939-8772025,
           8772094-8772179,8772270-8772368,8772431-8772551,
           8773251-8773331,8773643-8773723,8773972-8774088,
           8774185-8774256,8774621-8775055
          Length = 485

 Score =  127 bits (307), Expect = 6e-30
 Identities = 69/183 (37%), Positives = 107/183 (58%)
 Frame = +3

Query: 75  ISLNLRKSSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEAL 254
           IS ++R+++     VI S++ARQI D RG P VEV L T   + RA+  +  +     A 
Sbjct: 35  ISNHMRRAAPA---VITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAAD 91

Query: 255 ELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLG 434
            +RD  K +   + V  A++ IN+ ++  L    ++  QQ +ID+ ++ LD   +K+++G
Sbjct: 92  AVRDAEKRKLLARAVADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIG 149

Query: 435 ANAILGVSLXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQE 614
            N++L VS+           VPLYKH+A+L G +   LP+PA  VINGG+HAGN L +QE
Sbjct: 150 VNSMLAVSIAACKAGAAEKEVPLYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPIQE 209

Query: 615 FMI 623
            MI
Sbjct: 210 IMI 212


>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
            20063933-20064139,20064267-20064405,20065146-20065282,
            20065414-20065657,20065808-20065969,20066049-20066167,
            20066240-20066314,20066327-20066500,20066607-20066769,
            20067211-20067420,20067515-20067668,20067761-20067839,
            20067999-20068146,20068501-20068671,20068771-20069385
          Length = 1250

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 198  GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPE 341
            GL +A + SGA   +  A+E  D+    YHG  V  +++N   +IA +
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADD 1171


>01_01_0796 + 6190931-6192745
          Length = 604

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/75 (22%), Positives = 36/75 (48%)
 Frame = +3

Query: 198 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 377
           GLF+ A      TG   A+ + D  +S++H  G  T    ++  ++ ++ +A  E     
Sbjct: 29  GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARPVA 88

Query: 378 EIDELMLKLDGTENK 422
           + ++LM ++   E +
Sbjct: 89  D-EQLMERIAPLERE 102


>11_01_0660 +
           5382460-5382764,5383854-5384348,5384454-5384541,
           5384629-5384691,5384965-5385125,5385214-5385289,
           5385395-5385454,5385555-5385662,5385746-5385982,
           5386192-5386307,5386756-5386813
          Length = 588

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 261 RDNIKSEYHGKGVL--TAIKNINELIAPELTKANLEV 365
           RD   + + GKG +  T+ ++++ L  P+LT  NL+V
Sbjct: 518 RDTFPTSFDGKGAMVQTSNRSLSPLRDPDLTMRNLQV 554


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,939,469
Number of Sequences: 37544
Number of extensions: 285507
Number of successful extensions: 646
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)