Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d04f
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)              100   8e-22
SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                   84   8e-17
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)             31   1.0  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   4.1  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            28   5.4  
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)                  28   5.4  
SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)                     28   7.1  
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         27   9.4  

>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score =  100 bits (240), Expect = 8e-22
 Identities = 46/75 (61%), Positives = 58/75 (77%)
 Frame = +3

Query: 198 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 377
           G FRAAVPSGASTG++EALELRD   S++ GKGV  A+ N+N +I P L   N++VT Q 
Sbjct: 40  GTFRAAVPSGASTGIYEALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQE 99

Query: 378 EIDELMLKLDGTENK 422
           +ID +ML+LDGTENK
Sbjct: 100 DIDNMMLQLDGTENK 114


>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 36/43 (83%), Positives = 41/43 (95%)
 Frame = +3

Query: 495 VPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMI 623
           VPLYK++A LAGNN ++LPVPAFNVINGGSHAGNKLAMQEFM+
Sbjct: 26  VPLYKYIAGLAGNNQVILPVPAFNVINGGSHAGNKLAMQEFML 68


>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
          Length = 133

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 564 NVINGGSHAGNKLAMQEFMI 623
           N++NGG+HA + + +QEFMI
Sbjct: 2   NILNGGAHADSDVDIQEFMI 21


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 303 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKS 425
           TA KN+ +  A ELT  N + TQ+ +  +L   L  TEN++
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQ--QLTTLLQETENRN 717


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 267 NIKSEYHGKGVLTAIKNINELIAPELTK--ANLEVTQQRE 380
           N+K+E+ G+    AI ++ EL+ P   +    L++TQ R+
Sbjct: 219 NLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQ 258


>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
          Length = 553

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 504 YKHLADLAGNNDIVLPVPAFNVING-GSHAGNKLAMQE 614
           Y HL+ +   +D+ LPV  +N+ +G G   G+ +A+ E
Sbjct: 268 YLHLSRVKDKSDLCLPVTVYNMASGAGFVVGDAIAIPE 305


>SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)
          Length = 316

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 303 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIL 449
           T + +I E  A E+T+    V  +   D L+++++G EN+S+   N I+
Sbjct: 230 TGVGSIEE-DAAEITERLETVATRETTDLLLIRVEGLENRSRRNNNIII 277


>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 243 HEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQ 371
           H+A ++RD      +G+     +  IN L+AP +   +  +T+
Sbjct: 330 HQAQDVRDATSKALYGRLFSWIVNKINHLLAPSIESRDQHLTE 372


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 446 DSISTQFGFVLSAIQLKHEFINLSLLGYFEVGFCKFRSNEFID 318
           + + T F      ++ +H F    + GY + GF KFRS + +D
Sbjct: 633 EKLCTGFDVAERQLRKQHSFWFNDVCGYNQKGFRKFRSEQELD 675


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,114
Number of Sequences: 59808
Number of extensions: 340243
Number of successful extensions: 820
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)