Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d02r
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)                     33   0.23 
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 32   0.53 
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     30   2.1  
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)                     29   3.7  
SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 1007

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 480 GMVSWGFSCAR-GAPDMFVRISAFRSWLEENIV 385
           G VSWG  CAR G P ++  I  + +W+ +NIV
Sbjct: 648 GAVSWGVGCARKGQPGIYTDIKKYLNWI-DNIV 679


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 29  ILIYCDCPS*LLNCPVVAHGSHAGKHDLEC*ITLTSSLYNKTLTPF 166
           +LIY DCP  +  CP V +  H   +D    IT T  LY   L  F
Sbjct: 840 LLIY-DCPRVIYGCPRVIYSCHRVIYDYPLLITTTLVLYTTALVLF 884


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 480 GMVSWGFSCA-RGAPDMFVRISAFRSWLEENI 388
           G+VSWG  CA RG   ++ ++   + W+E  I
Sbjct: 297 GVVSWGHGCAGRGKFGVYAKVRYVKEWIESYI 328


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 483 VGMVSWGFSCARGAPDMFVRISAFRSWLEE 394
           +G+ SWG+ C +  P +F  + A   W+ E
Sbjct: 499 MGLSSWGWVCPQARPKVFSDVLAAMDWIRE 528


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 483 VGMVSWGFSCARGAPDMFVRISAFRSWLEE 394
           +G+ SWG+ C +  P +F  + A   W+ E
Sbjct: 748 MGLSSWGWVCPQARPKVFSDVLAAMDWIRE 777


>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 454

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 483 VGMVSWGFSCAR-GAPDMFVRISAFRSWL 400
           VG+ SWG+ CA    P ++ +++  + W+
Sbjct: 418 VGVTSWGYGCAHPDYPGIYAKLTELKDWV 446


>SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 480 GMVSWGFSCARGAPD---MFVRISAFRSWL 400
           G+VSWG S   G P+   ++VR++ F  W+
Sbjct: 326 GVVSWGSSLGCGLPNKYGVYVRVTQFLGWI 355


>SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 607 LQHVGPPRGPSH*TMHLPRQRNWCL 533
           ++H    R P H   ++PR+R+WC+
Sbjct: 156 IRHTPMLRQPVHERWNMPRERDWCM 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,302,257
Number of Sequences: 59808
Number of extensions: 392687
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)