Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d02f
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 28 0.96
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 27 1.7
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.7
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 2.9
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 27 2.9
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 26 3.9
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 3.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 5.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 6.8
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 9.0
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 9.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.0
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 28.3 bits (60), Expect = 0.96
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 219 RIAGVDTHRTHSWTLCGRCICGRNFAHQPPRHRRYERVELW 341
RIAGV +R+ + CI +F P RRY +VE W
Sbjct: 119 RIAGVTFYRSQMMLVTVTCILAVDFTLFP---RRYAKVETW 156
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 276 YTGHTMSSCEYGACRHQRSSTDET 205
YTGH ++ C++G C+ + TD T
Sbjct: 363 YTGH-IALCDFGLCKLNMAKTDRT 385
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 341 PEFHSFVPTVTRRLMCKIPPAYTPATQCP 255
P HSFVPT + + I P PA + P
Sbjct: 29 PRLHSFVPTSKQAALSDITPDTPPAFKTP 57
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 590 PSIVLTSITKSFSESGSRCPILP 522
P +LT I FS++G + PILP
Sbjct: 628 PPKILTKIPDIFSKAGKKSPILP 650
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 170 GWLPGAASVPPTIRAFGSACSKKMD 96
GWLPG +SV + A ++ SK D
Sbjct: 507 GWLPGQSSVRTSNNAMSASASKPSD 531
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 64 SALPTPEETDLSIFFEHADPNARIVG-GTEAAPGSHPHMVFLTSGR 198
S+LPTP DL +F E + P+ I T G H + ++S R
Sbjct: 273 SSLPTPHLADLILFCEKSYPSLPIYNPRTRELLGEIRHQLLVSSER 318
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 304 LRVTVGTNEWNSGGTEYTVARNITHPDFSLI--YLKNDIGLLITDEEVKLSDAV 459
+R T+G+++ + G + +ARNI H + Y+ +I D LSD++
Sbjct: 199 VRQTIGSSDSTNHGPAFQLARNIFHDSADRLQRYVCQYFSDIIFDSRDSLSDSM 252
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 293 KIPPAYTPATQCPAVSTVRVDTSDP 219
K PP P+++ P+VST R P
Sbjct: 1235 KAPPVPAPSSEAPSVSTPRSSVPSP 1259
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 5.1
Identities = 19/81 (23%), Positives = 33/81 (40%)
Frame = -2
Query: 287 PPAYTPATQCPAVSTVRVDTSDPPQMKLLIRPLVRKTMWGWLPGAASVPPTIRAFGSACS 108
P + AT P+V + S P MK I + + +S PP ++
Sbjct: 271 PSTSSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAYSASVSSQPPLTHSYVHPGP 330
Query: 107 KKMDKSVSSGVGSAEHAMNAV 45
+ S+SSG ++ + NA+
Sbjct: 331 QSHKYSLSSGPPASLYNANAL 351
Score = 25.4 bits (53), Expect = 6.8
Identities = 7/27 (25%), Positives = 15/27 (55%)
Frame = +3
Query: 279 CGRNFAHQPPRHRRYERVELWRYRIHR 359
CGR + + P + ++ W +RI++
Sbjct: 426 CGRRYGNDPESRKELDKHSDWHFRINK 452
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 6.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -2
Query: 596 ASPSIVLTSITKSFSESGSRCPILPHPATLTGTPLDTKS*LNLMGRTASDNFTSSSV 426
AS SI +S+ S + S S + +T + TP + + +L AS++ TSSS+
Sbjct: 140 ASSSITSSSLASSSTTSSSLASSSTN-STTSATPTSSATSSSLSSTAASNSATSSSL 195
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -1
Query: 351 FGTARVPLVRTDGDAEVDVQNSARIYTGHTMSSCEYGACRHQRSSTDETPDSSAGQKNHV 172
FGT P + D +VD+ + G T++ + R + + P +A K V
Sbjct: 979 FGTTTKPKDVSQSDIKVDINRESNSDNGETITG-THDVYRQTDNPEIKLPSDTASSK--V 1035
Query: 171 GVAPWSSFGPSDDTG 127
+ P+DDTG
Sbjct: 1036 DTHNPTVTQPTDDTG 1050
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.0 bits (52), Expect = 9.0
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -1
Query: 294 QNSARIYTGHTMSSC--EYGA-CRHQRSSTDETPDSSAGQKNHVGVAPWSSFGPSDDTGI 124
Q SAR+ TM+S Y ++ + D+ K H + S FGP D+G
Sbjct: 178 QKSARLEHVDTMNSSYSSYKTDVKYPLALDDKLSSVPTLPKFHDALTSTSEFGPPSDSGD 237
Query: 123 WIGVLEEDG*IR 88
+G + G I+
Sbjct: 238 TVGTTQYPGDIK 249
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 269 PVYMRAEFCTSTSASPSVRTSGTLAVPNTP 358
PV AE ST P+V S + VPN P
Sbjct: 209 PVPSAAEESVSTPPQPAVAPSVSAVVPNLP 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,675
Number of Sequences: 5004
Number of extensions: 61719
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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