Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d02f
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16630.1 68415.m01909 proline-rich family protein contains pr...    32   0.27 
At2g48160.1 68415.m06031 PWWP domain-containing protein                31   0.47 
At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containi...    31   0.83 
At2g39870.1 68415.m04899 expressed protein                             30   1.1  
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    29   3.3  
At4g18160.1 68417.m02698 outward rectifying potassium channel, p...    28   4.4  
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family...    28   4.4  
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a...    28   5.8  
At1g48670.1 68414.m05447 auxin-responsive GH3 family protein sim...    28   5.8  
At5g52870.1 68418.m06562 expressed protein similar to unknown pr...    27   7.7  
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    27   7.7  
At5g03455.1 68418.m00301 rhodanese-like domain-containing protei...    27   7.7  
At4g23530.1 68417.m03391 expressed protein                             27   7.7  
At3g45840.1 68416.m04961 DC1 domain-containing protein contains ...    27   7.7  

>At2g16630.1 68415.m01909 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 24/83 (28%), Positives = 35/83 (42%)
 Frame = -2

Query: 347 VPPEFHSFVPTVTRRLMCKIPPAYTPATQCPAVSTVRVDTSDPPQMKLLIRPLVRKTMWG 168
           VP + H  VP ++       PPA  P  + P +S     T  PP + ++  P V      
Sbjct: 170 VPVKPHPKVPVISPD-----PPATLPPPKVPVISPDPPTTLPPPLVPVINLPPVTSPPQF 224

Query: 167 WLPGAASVPPTIRAFGSACSKKM 99
            LP    +PP      SACS ++
Sbjct: 225 KLPPLPQIPPMPFVEPSACSHQL 247


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 165  PPPHGFSDQRTNQEFHLWRIAGVDTHRTHSWTLCGRCICGRNFA--HQPPRHRRYERVEL 338
            PP H FS +         R A   +HR+H    C      RNF   H+  RH  +E  + 
Sbjct: 1242 PPQHQFSFREPGHVLKSHRDAPSYSHRSHYVPNCDE----RNFHDNHERMRHAPFENRDN 1297

Query: 339  WRY 347
            WRY
Sbjct: 1298 WRY 1300


>At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1030

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 423 EKTDVVLQVDEAKVRVCYISGHGVFG 346
           EK DVV  + +  VR+C IS H  FG
Sbjct: 308 EKVDVVQSIADDMVRICEISEHDAFG 333


>At2g39870.1 68415.m04899 expressed protein
          Length = 330

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -2

Query: 593 SPSIVLTSITKSFSESGSRCPILPHPATLTGT 498
           SP   L+ +  SFS SGSR PILP P   T +
Sbjct: 100 SPQSTLSGLG-SFSNSGSRSPILPSPPAPTSS 130


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 315 GDAEVDVQNSARIYTGHTMSSCEYGACRHQRSSTDETP 202
           G   V+ Q  AR+  G   +  EYG  R+  +  D TP
Sbjct: 221 GSVAVNPQTGARLGKGEGFAELEYGMLRYMGAIDDSTP 258


>At4g18160.1 68417.m02698 outward rectifying potassium channel,
           putative (KCO6) similar to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158; member of the 2 pore, 4
           transmembrane (2P/4TM) K+ channel family, PMID:11500563
          Length = 436

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 608 ALTQASPSIVLTSITKSFSESGSRCPILPHP 516
           ++ Q SPS   T++   FS+S +  P+LP P
Sbjct: 67  SMKQPSPSSSSTAVNNPFSDSSTLDPLLPPP 97


>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
           protein 
          Length = 660

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
 Frame = -2

Query: 320 PTVTRR-LMCKIPPAYTPATQCPAVSTVRVDTSDPPQMKLLIRPLVRKTMWGWL-----P 159
           P+VT + +  + PP  TP  + P + +    TS  P     +  + R+TM   L     P
Sbjct: 566 PSVTSKAISLQSPPCNTPQPRPPPLISNHTPTSYQPASAPPVHGIARRTMAPHLRSSRAP 625

Query: 158 GAASVPPTIRAFGSACSKKMDKSVSSGV 75
            +A+ P T         K+  K  +S +
Sbjct: 626 NSAAAPSTYPRLAQEQQKQQQKKSNSSL 653


>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1050

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 560 SFSESGSRCPILPHPATLTGTPLDTKS*LNLMGRTASDNFTSSSVMRRPM 411
           SF  S +R   LP+ A LT T   T   + + G+T   +  +S  +R P+
Sbjct: 252 SFENSLARYQNLPYNAPLTQTQPSTFGLIPMEGKTEKGSLLTSEHLRNPL 301


>At1g48670.1 68414.m05447 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 525

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 346 TEYTVARNITHPDFSLIYLKNDIGLLITDEEVKLSDAVRPIKLSY 480
           T YT A NI++ +F  +  K D+  ++   +VKL     P+  +Y
Sbjct: 291 TSYTCAPNISYFEFLPVDHKGDMASIVDLVDVKLGCYYEPVVTNY 335


>At5g52870.1 68418.m06562 expressed protein similar to unknown
           protein (gb|AAF24565.1)
          Length = 326

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 326 FVPTVTRRLMCKIPPAYTPATQCPAVSTVRVDTSDP 219
           F  +V++R    I P YT +T+  + ST+   TS P
Sbjct: 168 FDDSVSKRFFSLIKPLYTKSTKKQSSSTITSPTSSP 203


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
            contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
 Frame = +1

Query: 304  LRVTVGTNEWNSGGTEYTVAR---------NITHPDFSLIYLK-NDIGLLITDEEVKLSD 453
            LR+ +G  E   GGT Y VAR         +  H + SLI +K   +  L+  + +   D
Sbjct: 729  LRLRLGKWEEGLGGTGYYVARIDGDTEGQSSRRHSEKSLISVKVKGVTCLVESQFISNQD 788

Query: 454  AVRPIKLSYDFVSSGVPVRVAGWGRIGHREPLSEKL 561
             +   +L   + S+G   R +G+  I   E LS K+
Sbjct: 789  FLEE-ELKAWWQSAGKSARTSGYDGIPSAEELSRKI 823


>At5g03455.1 68418.m00301 rhodanese-like domain-containing protein
           contains Rhodanese-like domain PF:00581
          Length = 146

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 354 VFGTARVPLVRTDGDAEVDVQNSARIYTGHTMSSCEYGA 238
           +  T  +PL R    A +DV++  R Y GH   S  Y +
Sbjct: 24  ITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYAS 62


>At4g23530.1 68417.m03391 expressed protein
          Length = 396

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 196 VRWSEKPCGGGSL-EQLRSLRRYGHLDRRARRRWINPSPQESEV 68
           ++  EK CGGG L E+++ + + G        R+  P+ +E EV
Sbjct: 302 IKRKEKRCGGGGLMEEMQRMEKIGLSLMEFAERFRFPADEEEEV 345


>At3g45840.1 68416.m04961 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 633

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = +3

Query: 144 DRSCSREPPPHGFSDQRTNQEFHLWRIAGVDTHRTHSWTLCGRCICGRNFAHQPPRHRRY 323
           D SC+R+PPP    D + +  F   +I+G+     +   +CG  +    + +  P   +Y
Sbjct: 109 DTSCARKPPPPPTHDFQ-DLPFVFPKISGI----YNCCGVCGHSVVAGKYYYSLPSRDQY 163

Query: 324 ERVELWRYRIHRGQKYNTP*L*PHLLE 404
             +E     I+  +K N P    H LE
Sbjct: 164 AHLEC----IYHEKKVNLPFHPNHPLE 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,202,284
Number of Sequences: 28952
Number of extensions: 355111
Number of successful extensions: 1210
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)