Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c23r
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05510.1 68415.m00583 glycine-rich protein                          35   0.065
At3g28840.1 68416.m03598 expressed protein                             33   0.20 
At3g63100.1 68416.m07087 glycine-rich protein                          31   1.1  
At2g05440.2 68415.m00575 glycine-rich protein                          31   1.1  
At2g05440.1 68415.m00574 glycine-rich protein                          31   1.1  
At1g27090.1 68414.m03302 glycine-rich protein                          30   1.9  
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    29   3.3  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    28   5.7  

>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +2

Query: 308 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 439
           H G   H  GGH G   + H   GHNGG  H   GY    G +Y
Sbjct: 44  HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 439
           GH G   H HGGH G     H   G+ GG    H G+    G +Y
Sbjct: 54  GHYGGGGHGHGGHNG--GGGHGLDGYGGG----HGGHYGGGGGHY 92


>At3g28840.1 68416.m03598 expressed protein 
          Length = 391

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 29/96 (30%), Positives = 38/96 (39%)
 Frame = +3

Query: 369 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 548
           G+ A+ AG+   T A+ G SAT TG     AG +  +G       T    G+T + G   
Sbjct: 186 GIDASAAGAGDST-ASGGVSATGTGSYGAGAGGSSASGSDTAAGGTTATGGTTAAGGSTA 244

Query: 549 AASLMLIRMWTRGVSCPGTRGPTWTGDGTMGASTRA 656
           A         T G       G T +G GT    T A
Sbjct: 245 AGGTTASGAGTAGYGAT-AGGATASGAGTAAGGTTA 279


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
 Frame = +2

Query: 302 RGHNGRVSHDHG---GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNY 439
           RGH     H HG   GH+ H  +    R    H G   H HRG+ R  G  +
Sbjct: 90  RGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +2

Query: 326 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 493
           HD+G    H  + H   GH  G  H   G+ R  G+     +  G     HGR+ R
Sbjct: 62  HDYGRDCCHCDHCH---GHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHR 114



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN 436
           G + R   D G H+GH    H  RGH  G    H G+ R  G +
Sbjct: 110 GRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRGRGGH 150



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/62 (29%), Positives = 23/62 (37%)
 Frame = +2

Query: 308 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 487
           H     H H  H GH       RGH  G  H HR + R   +     ++ G   + H R 
Sbjct: 75  HGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGH-GHHHHRG 132

Query: 488 SR 493
            R
Sbjct: 133 HR 134


>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 400
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +2

Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 415
           GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 46  GHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 400
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +2

Query: 305 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 415
           GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 46  GHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 302 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 463
           +   GR     GG  G   N    RG  GG  +  +  Y +S GN Y+  YY+ R
Sbjct: 340 QNQRGRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
 Frame = +3

Query: 375 GATMA-GSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALA 551
           G+T A G A   G+T   S T T   +M  GSA      AG  S     GST + G + +
Sbjct: 465 GSTEANGGAAAGGSTEAGSGTSTETSSMGGGSA-----AAGGVSESSSGGSTAAGGTSES 519

Query: 552 ASLMLIRMWTRGVSCPGTRGPTWTGDGTMGASTRAGPTSGLS 677
           AS       T G +  GT   + TG    G+ +  GP+   S
Sbjct: 520 AS---GGSATAGGASGGTYTDS-TGGSPTGSPSAGGPSGSAS 557


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 682 HYESPDVGPALVEAPIVPSPVHVGPLVP 599
           HY SP   P    +P  PSP   GPL P
Sbjct: 452 HYSSPPPPPVHHSSPPPPSPEFEGPLPP 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,104,236
Number of Sequences: 28952
Number of extensions: 169880
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)